Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACEL84_RS02735 Genome accession   NZ_CP168212
Coordinates   574776..575294 (+) Length   172 a.a.
NCBI ID   WP_261894852.1    Uniprot ID   -
Organism   Vibrio porteresiae strain MSSRF31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 569776..580294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEL84_RS02725 (ACEL84_02725) gshA 572577..574142 (+) 1566 WP_261894851.1 glutamate--cysteine ligase -
  ACEL84_RS02730 (ACEL84_02730) - 574144..574749 (+) 606 WP_261896208.1 hypothetical protein -
  ACEL84_RS02735 (ACEL84_02735) luxS 574776..575294 (+) 519 WP_261894852.1 S-ribosylhomocysteine lyase Regulator
  ACEL84_RS02740 (ACEL84_02740) - 575404..576681 (-) 1278 WP_261894853.1 HlyC/CorC family transporter -
  ACEL84_RS02745 (ACEL84_02745) - 576768..577562 (-) 795 WP_261894854.1 inner membrane protein YpjD -
  ACEL84_RS02750 (ACEL84_02750) ffh 577789..579177 (+) 1389 WP_261894856.1 signal recognition particle protein -
  ACEL84_RS02755 (ACEL84_02755) rpsP 579399..579647 (+) 249 WP_042480523.1 30S ribosomal protein S16 -
  ACEL84_RS02760 (ACEL84_02760) rimM 579671..580225 (+) 555 WP_261894858.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19124.09 Da        Isoelectric Point: 6.3776

>NTDB_id=1043100 ACEL84_RS02735 WP_261894852.1 574776..575294(+) (luxS) [Vibrio porteresiae strain MSSRF31]
MPLLDSFTVDHTRMHAPAVRVAKNMTTPKGDTITVFDLRFTVPNKDILSERGIHTLEHLFAGFMRAHLNGSDVEIIDISP
MGCRTGFYMSLIGAPDEQRVAKAWLAAMEDVLKVEDQNKIPELNKYQCGTAAMHSLEQAKQIAQNVISAGIQVNKNEDLA
LPEAMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1043100 ACEL84_RS02735 WP_261894852.1 574776..575294(+) (luxS) [Vibrio porteresiae strain MSSRF31]
ATGCCACTATTAGACAGTTTTACCGTCGATCATACACGTATGCATGCACCAGCAGTTCGTGTGGCAAAAAATATGACAAC
CCCTAAAGGCGATACAATCACTGTATTCGACCTGCGTTTTACTGTACCAAATAAAGACATTTTGTCTGAAAGAGGTATTC
ATACTCTAGAACATCTGTTTGCTGGCTTTATGCGTGCGCATTTAAACGGTTCTGATGTTGAAATCATTGATATTTCACCA
ATGGGTTGTCGTACTGGTTTTTACATGAGCCTTATTGGCGCTCCTGATGAACAGCGTGTAGCAAAAGCTTGGTTAGCTGC
GATGGAAGATGTTTTGAAAGTTGAAGATCAAAACAAGATTCCTGAATTGAACAAATACCAATGCGGTACTGCAGCTATGC
ACTCACTAGAACAAGCTAAGCAGATTGCACAAAATGTCATTTCTGCAGGTATTCAAGTGAATAAAAACGAAGATTTGGCA
TTGCCAGAAGCGATGTTGAAAGAACTTAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.465

100

0.855

Multiple sequence alignment