Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACEL84_RS02620 Genome accession   NZ_CP168212
Coordinates   555345..556412 (+) Length   355 a.a.
NCBI ID   WP_261894837.1    Uniprot ID   -
Organism   Vibrio porteresiae strain MSSRF31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 550345..561412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEL84_RS02605 (ACEL84_02605) rpoS 550978..551988 (+) 1011 WP_261894834.1 RNA polymerase sigma factor RpoS Regulator
  ACEL84_RS02610 (ACEL84_02610) mutS 552054..554618 (-) 2565 WP_261894835.1 DNA mismatch repair protein MutS -
  ACEL84_RS02615 (ACEL84_02615) pncC 554703..555188 (+) 486 WP_261894836.1 nicotinamide-nucleotide amidase -
  ACEL84_RS02620 (ACEL84_02620) recA 555345..556412 (+) 1068 WP_261894837.1 recombinase RecA Machinery gene
  ACEL84_RS02625 (ACEL84_02625) recX 556476..556940 (+) 465 WP_261894838.1 recombination regulator RecX -
  ACEL84_RS02630 (ACEL84_02630) - 557027..558028 (-) 1002 WP_261894839.1 hypothetical protein -
  ACEL84_RS02635 (ACEL84_02635) - 558316..558468 (-) 153 WP_261894840.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38375.79 Da        Isoelectric Point: 4.9796

>NTDB_id=1043099 ACEL84_RS02620 WP_261894837.1 555345..556412(+) (recA) [Vibrio porteresiae strain MSSRF31]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNRQGELIDLGVKHKLVEKSGAWYSYNGDKIGQGKANACKYLKENPEVAKVLDT
KLRELLLNPAEHAEHGETSVENDDDFSAVPEQDEL

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1043099 ACEL84_RS02620 WP_261894837.1 555345..556412(+) (recA) [Vibrio porteresiae strain MSSRF31]
ATGGACGAAAATAAACAGAAGGCTCTCGCAGCAGCCCTAGGTCAAATTGAGAAACAATTCGGTAAAGGTTCCATTATGCG
CCTTGGTGACAACCGCACAATGGATGTAGAAACGATCTCTACAGGTTCTCTCTCTCTAGACATCGCTTTAGGTGCTGGTG
GTTTACCGATGGGCCGTATCGTTGAAATTTATGGTCCAGAATCGTCAGGTAAAACAACACTGACTCTAGAACTGATTGCT
GCAGCGCAACGTGAAGGTAAAACCTGTGCGTTTATCGATGCAGAACACGCTCTTGACCCTATCTACGCTCGTAAATTGGG
TGTAAACATCGATGAACTTCTTGTTTCTCAGCCAGATACTGGTGAGCAAGCTCTTGAAATTTGTGACGCTTTGGCTCGCT
CAGGCGCAGTGGATGTTATGGTTGTCGACTCAGTTGCTGCGTTGACTCCTAAAGCAGAAATTGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTAACTGGTAACCTAAAAGCATCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACTGGTGGTAACGCTC
TGAAATTCTACGCTTCTGTTCGTCTTGATATTCGTCGTACTGGCGCAATCAAAGAGGGTGACGAAGTGGTTGGCAACGAA
ACTCGTATCAAAGTTGTGAAGAACAAAATTGCTGCGCCGTTTAAAGAAGCTAACACTCAGATCATGTATGGCCAAGGTTT
TAACCGTCAAGGTGAACTGATTGACCTAGGTGTAAAACACAAATTGGTCGAAAAATCAGGTGCTTGGTATAGCTACAATG
GCGACAAAATTGGTCAAGGTAAAGCGAACGCTTGTAAGTATCTGAAAGAAAATCCAGAAGTTGCAAAAGTTCTTGATACC
AAATTACGTGAGCTATTGTTGAACCCAGCAGAGCACGCTGAGCATGGTGAAACTAGCGTAGAGAATGACGACGATTTTAG
CGCAGTTCCAGAGCAAGATGAGCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

92.351

99.437

0.918
  recA Vibrio cholerae O1 biovar El Tor strain E7946

92.351

99.437

0.918
  recA Pseudomonas stutzeri DSM 10701

76.147

92.113

0.701
  recA Acinetobacter baylyi ADP1

71.884

97.183

0.699
  recA Acinetobacter baumannii D1279779

70.725

97.183

0.687
  recA Glaesserella parasuis strain SC1401

70.175

96.338

0.676
  recA Neisseria gonorrhoeae MS11

69.018

91.831

0.634
  recA Neisseria gonorrhoeae MS11

69.018

91.831

0.634
  recA Neisseria gonorrhoeae strain FA1090

69.018

91.831

0.634
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.606

0.625
  recA Streptococcus mutans UA159

58.689

98.873

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.747

93.521

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.557

89.014

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.423

0.572
  recA Streptococcus pneumoniae D39

62.848

90.986

0.572
  recA Streptococcus pneumoniae TIGR4

62.848

90.986

0.572
  recA Streptococcus pneumoniae Rx1

62.848

90.986

0.572
  recA Streptococcus pneumoniae R6

62.848

90.986

0.572
  recA Streptococcus mitis SK321

62.848

90.986

0.572
  recA Streptococcus mitis NCTC 12261

62.539

90.986

0.569
  recA Helicobacter pylori strain NCTC11637

61.538

91.549

0.563
  recA Helicobacter pylori 26695

61.231

91.549

0.561
  recA Streptococcus pyogenes NZ131

61.231

91.549

0.561
  recA Lactococcus lactis subsp. cremoris KW2

61.3

90.986

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

61.371

90.423

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.62

88.169

0.552

Multiple sequence alignment