Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABRP31_RS23140 Genome accession   NZ_CP167995
Coordinates   5100041..5101258 (+) Length   405 a.a.
NCBI ID   WP_087274561.1    Uniprot ID   A0A1Y3P1Y4
Organism   Pseudomonas caspiana strain WHRI 7043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5095041..5106258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP31_RS23120 (ABRP31_023120) nadC 5096457..5097305 (+) 849 WP_087264928.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABRP31_RS23130 (ABRP31_023130) - 5097697..5098119 (-) 423 WP_349969605.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABRP31_RS23135 (ABRP31_023135) pilB 5098344..5100038 (+) 1695 WP_087274562.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABRP31_RS23140 (ABRP31_023140) pilC 5100041..5101258 (+) 1218 WP_087274561.1 type II secretion system F family protein Machinery gene
  ABRP31_RS23145 (ABRP31_023145) pilD 5101261..5102133 (+) 873 WP_349969604.1 A24 family peptidase Machinery gene
  ABRP31_RS23150 (ABRP31_023150) coaE 5102130..5102753 (+) 624 WP_349969603.1 dephospho-CoA kinase -
  ABRP31_RS23155 (ABRP31_023155) yacG 5102750..5102950 (+) 201 WP_087274556.1 DNA gyrase inhibitor YacG -
  ABRP31_RS23160 (ABRP31_023160) - 5103078..5103764 (-) 687 WP_349969602.1 energy-coupling factor ABC transporter permease -
  ABRP31_RS23165 (ABRP31_023165) - 5103761..5104228 (-) 468 WP_349969601.1 hypothetical protein -
  ABRP31_RS23170 (ABRP31_023170) - 5104657..5105286 (+) 630 WP_349969599.1 DUF1780 domain-containing protein -
  ABRP31_RS23175 (ABRP31_023175) - 5105283..5105792 (+) 510 WP_349969598.1 MOSC domain-containing protein -
  ABRP31_RS23180 (ABRP31_023180) - 5105821..5105994 (+) 174 WP_087274545.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44247.37 Da        Isoelectric Point: 10.0337

>NTDB_id=1040989 ABRP31_RS23140 WP_087274561.1 5100041..5101258(+) (pilC) [Pseudomonas caspiana strain WHRI 7043]
MASKAAKAIVFTWEGTDKKGAKMTGELTGHNPALIKAQLRKQGINPTKVRKKPVSIFGSGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGSENPNMRKLIEEIKSEVAAGNSFATALRQKPQYFDDLYCNLVDAGEQAGALEALLDRVATYKEKT
EALKAKIKKAMTYPIMVMIMAFVVSGIMLLYVVPKFQDIFAGFGAELPAFTLMVIGLSKIVQDWWLIILGLMFASIFLFR
RSYKGSQNFRDSVDRKLLKLPIIGPLLFKSSIARFARTLSTTFAAGVPLVEALDSVAGATGNVVFRNAVNKVKQDVSTGM
QLNFSMRATGVFPSLAIQMTAIGEESGALDAMLDKVATYYEDEVDNMVDNLTSMMEPMIMAILGVIVGGLVIAMYLPIFK
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1040989 ABRP31_RS23140 WP_087274561.1 5100041..5101258(+) (pilC) [Pseudomonas caspiana strain WHRI 7043]
ATGGCCAGCAAAGCGGCGAAAGCTATCGTTTTTACTTGGGAAGGTACGGACAAGAAAGGCGCGAAGATGACCGGCGAACT
GACCGGCCACAATCCGGCGCTGATCAAAGCGCAGTTGCGTAAGCAGGGCATCAACCCGACTAAAGTGCGCAAGAAACCGG
TTTCGATCTTCGGCTCCGGGAAAAAAATCAAACCGCTGGATATCGCGTTTTTCTCCCGGCAAATGGCGACCATGATGAAA
GCCGGAGTACCGCTGTTGCAGTCCTTCGACATCATTGCCGAGGGTTCGGAAAACCCGAACATGCGCAAGCTGATCGAGGA
AATAAAAAGCGAAGTCGCCGCGGGTAACAGCTTCGCTACCGCTCTGCGGCAGAAACCGCAATACTTCGACGACTTGTACT
GCAATCTGGTCGACGCTGGTGAACAGGCGGGTGCGCTGGAAGCCTTGCTGGACCGGGTAGCAACTTACAAGGAAAAGACC
GAAGCGCTCAAAGCCAAGATCAAGAAAGCAATGACTTACCCGATCATGGTAATGATCATGGCGTTTGTGGTTTCCGGGAT
CATGCTGCTGTACGTGGTGCCGAAATTTCAGGACATCTTTGCCGGCTTTGGTGCAGAGCTGCCCGCGTTCACCCTGATGG
TCATCGGCCTCTCGAAAATCGTTCAGGATTGGTGGCTCATCATCCTTGGGTTGATGTTCGCCAGTATTTTCCTGTTCCGA
CGCAGTTACAAAGGATCACAGAACTTCCGCGACAGCGTTGATCGCAAGTTGCTGAAGCTCCCGATTATCGGCCCGCTGCT
CTTCAAGTCTTCGATCGCCCGTTTCGCTCGTACCCTGTCCACAACCTTTGCCGCTGGGGTGCCGTTGGTCGAAGCGCTGG
ACTCCGTAGCCGGAGCGACCGGCAACGTCGTGTTCCGCAACGCGGTGAACAAGGTCAAGCAGGATGTTTCCACCGGTATG
CAGCTCAACTTCTCCATGCGCGCCACCGGTGTGTTTCCCAGCCTGGCGATTCAGATGACCGCGATTGGCGAGGAGTCAGG
TGCGCTGGACGCCATGCTCGATAAAGTCGCCACTTACTACGAGGATGAAGTCGACAACATGGTCGACAACCTCACCAGCA
TGATGGAGCCGATGATCATGGCCATCCTCGGCGTGATCGTTGGCGGTCTGGTGATCGCTATGTACTTGCCTATCTTCAAA
CTCGGAAGCGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y3P1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.086

100

0.731
  pilC Acinetobacter baumannii D1279779

60.049

100

0.605
  pilC Acinetobacter baylyi ADP1

59.804

100

0.602
  pilC Legionella pneumophila strain ERS1305867

53.769

98.272

0.528
  pilG Neisseria gonorrhoeae MS11

43.921

99.506

0.437
  pilG Neisseria meningitidis 44/76-A

43.921

99.506

0.437
  pilC Vibrio cholerae strain A1552

43.434

97.778

0.425
  pilC Vibrio campbellii strain DS40M4

42.569

98.025

0.417
  pilC Thermus thermophilus HB27

38.25

98.765

0.378

Multiple sequence alignment