Detailed information NTG1040990

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABRP31_RS23145
• Genome accession: NZ_CP167995
• Coordinates: 5101261..5102133 (+)
• Length: 290 a.a.
• NCBI ID: WP_349969604.1
• Uniprot ID: -
• Organism: Pseudomonas caspiana strain WHRI 7043
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5096261..5107133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP31_RS23120 (ABRP31_023120)	nadC	5096457..5097305 (+)	849	WP_087264928.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ABRP31_RS23130 (ABRP31_023130)	-	5097697..5098119 (-)	423	WP_349969605.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ABRP31_RS23135 (ABRP31_023135)	pilB	5098344..5100038 (+)	1695	WP_087274562.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABRP31_RS23140 (ABRP31_023140)	pilC	5100041..5101258 (+)	1218	WP_087274561.1	type II secretion system F family protein	Machinery gene
ABRP31_RS23145 (ABRP31_023145)	pilD	5101261..5102133 (+)	873	WP_349969604.1	A24 family peptidase	Machinery gene
ABRP31_RS23150 (ABRP31_023150)	coaE	5102130..5102753 (+)	624	WP_349969603.1	dephospho-CoA kinase	-
ABRP31_RS23155 (ABRP31_023155)	yacG	5102750..5102950 (+)	201	WP_087274556.1	DNA gyrase inhibitor YacG	-
ABRP31_RS23160 (ABRP31_023160)	-	5103078..5103764 (-)	687	WP_349969602.1	energy-coupling factor ABC transporter permease	-
ABRP31_RS23165 (ABRP31_023165)	-	5103761..5104228 (-)	468	WP_349969601.1	hypothetical protein	-
ABRP31_RS23170 (ABRP31_023170)	-	5104657..5105286 (+)	630	WP_349969599.1	DUF1780 domain-containing protein	-
ABRP31_RS23175 (ABRP31_023175)	-	5105283..5105792 (+)	510	WP_349969598.1	MOSC domain-containing protein	-
ABRP31_RS23180 (ABRP31_023180)	-	5105821..5105994 (+)	174	WP_087274545.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31828.89 Da
• Isoelectric Point: 7.0174

>NTDB_id=1040990 ABRP31_RS23145 WP_349969604.1 5101261..5102133(+) (pilD) [Pseudomonas caspiana strain WHRI 7043]
MSLVDFLASSPLAFVLSALILGLLVGSFLNVLVYRLPIMMERDWQAQSREMLKLPAEPVSETFNLILPHSRCPHCAHQIR
PWENLPVISYLFLGGKCSSCKAPISKRYPLVELACGLLSGYVAWHFGFGWAAAAMLVLSWGLLAMSLIDADHQLLPDDLV
LPLLWMGLIVNSFGVLTTLGDALWGAVAGYLVLWSVYWLFKLITGKEGMGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGLIMLRLRNAETSTPIPFGPYLAIAGWIALLWGGQITDSYLQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=1040990 ABRP31_RS23145 WP_349969604.1 5101261..5102133(+) (pilD) [Pseudomonas caspiana strain WHRI 7043]
ATGTCCCTTGTTGATTTCCTGGCCAGCTCACCGCTGGCCTTTGTTTTATCCGCGCTGATTCTTGGTTTGCTGGTGGGCAG
CTTTCTCAATGTGCTGGTCTACCGTCTGCCGATCATGATGGAGCGCGACTGGCAGGCTCAATCCAGGGAAATGCTCAAGC
TGCCCGCCGAGCCAGTAAGCGAGACCTTCAACCTGATCCTGCCCCACTCGCGCTGCCCCCATTGCGCCCATCAAATCCGC
CCGTGGGAAAACCTGCCGGTGATCAGTTATCTGTTTCTGGGTGGCAAGTGTTCAAGCTGCAAGGCACCGATCAGCAAGCG
CTATCCGTTAGTAGAACTGGCCTGCGGCCTGCTGTCCGGCTACGTCGCCTGGCACTTCGGTTTCGGCTGGGCTGCTGCGG
CGATGCTGGTACTGAGCTGGGGCTTGCTGGCCATGAGTCTGATCGATGCCGACCACCAGTTGCTGCCTGATGACTTGGTG
TTACCGCTGCTGTGGATGGGCCTGATCGTTAACTCATTCGGCGTGCTCACGACCTTGGGCGACGCTCTCTGGGGCGCGGT
GGCGGGTTATCTGGTGTTGTGGTCGGTGTACTGGCTGTTCAAACTGATTACCGGCAAGGAAGGCATGGGCCATGGCGACT
TCAAATTACTGGCGATGCTCGGGGCGTGGGGTGGCTGGCAGATCCTGCCGTTGACCATTCTGCTGTCATCGCTGGTGGGC
GCTGTATTGGGGCTGATCATGCTGCGTTTGCGCAATGCCGAAACCAGCACGCCGATCCCCTTCGGTCCCTATCTGGCCAT
CGCAGGCTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAATTCGCCGGATTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.348	95.172	0.517
pilD	Vibrio campbellii strain DS40M4	53.986	95.172	0.514
pilD	Acinetobacter baumannii D1279779	50.175	98.276	0.493
pilD	Acinetobacter nosocomialis M2	49.825	98.276	0.49
pilD	Neisseria gonorrhoeae MS11	50	92.414	0.462