Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCQ13_RS14545 Genome accession   NZ_CP167859
Coordinates   3382017..3383279 (+) Length   420 a.a.
NCBI ID   WP_372372273.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1638     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3367698..3383279 3382017..3383279 within 0


Gene organization within MGE regions


Location: 3367698..3383279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ13_RS14480 (ACCQ13_14480) - 3367698..3368078 (+) 381 WP_372372247.1 hypothetical protein -
  ACCQ13_RS14485 (ACCQ13_14485) sucD 3368196..3369071 (-) 876 WP_104604276.1 succinate--CoA ligase subunit alpha -
  ACCQ13_RS14490 (ACCQ13_14490) sucC 3369096..3370265 (-) 1170 WP_104604278.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ13_RS14495 (ACCQ13_14495) - 3370500..3372113 (+) 1614 WP_104604280.1 PAS domain-containing sensor histidine kinase -
  ACCQ13_RS14500 (ACCQ13_14500) pilR 3372273..3373667 (+) 1395 WP_372372250.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ13_RS14505 (ACCQ13_14505) pilB 3374491..3376227 (-) 1737 WP_372372254.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ13_RS14510 (ACCQ13_14510) - 3376321..3376929 (-) 609 WP_372372259.1 class I SAM-dependent methyltransferase -
  ACCQ13_RS14515 (ACCQ13_14515) - 3376922..3377962 (-) 1041 WP_372372261.1 glycosyltransferase family 2 protein -
  ACCQ13_RS14520 (ACCQ13_14520) - 3377959..3378756 (-) 798 WP_372372263.1 glycosyltransferase -
  ACCQ13_RS14525 (ACCQ13_14525) - 3378760..3379140 (-) 381 WP_372372265.1 SMR family transporter -
  ACCQ13_RS14530 (ACCQ13_14530) - 3379467..3379880 (+) 414 WP_372372267.1 pilin -
  ACCQ13_RS14535 (ACCQ13_14535) - 3381200..3381391 (-) 192 WP_372372269.1 hypothetical protein -
  ACCQ13_RS14540 (ACCQ13_14540) - 3381392..3381907 (+) 516 WP_372372271.1 hypothetical protein -
  ACCQ13_RS14545 (ACCQ13_14545) pilC 3382017..3383279 (+) 1263 WP_372372273.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45829.34 Da        Isoelectric Point: 10.3578

>NTDB_id=1039922 ACCQ13_RS14545 WP_372372273.1 3382017..3383279(+) (pilC) [Xanthomonas sp. NCPPB 1638]
MSALGSTVKKGAKPANRVNSMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGAAGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWL
PILLVVLGSAAGLIMAYKRSPKMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1039922 ACCQ13_RS14545 WP_372372273.1 3382017..3383279(+) (pilC) [Xanthomonas sp. NCPPB 1638]
ATGTCAGCACTGGGTAGCACTGTGAAGAAGGGGGCTAAACCGGCCAATCGCGTTAATTCGATGACGTCGTTCGTCTGGGA
GGGGACAGACAAGCGCGGCGTCAAAATGAAGGGAGATGAGTTGGCTCGTAATGCGAATATGCTGCGAGCCGAACTCCGCC
GCAGGGGAATCAATCCCACTGTCGTTAAGACAAAGCCCAAGCCATTGTTCGGCGCGGCCGGCAAGCCGATCAAACCGAAG
GACATCGCATTCTTCAGTCGCCAGATTGCGACCATGATGAAATCAGGCGTCCCTATGGTCGGCACCCTGGAAATCATCGG
CGAAGGCTCCAAGAACCCCCGCATGCGAAAGATGGTTGGCGAAATCCGTACCGACATCGAAGGTGGATCGTCGCTCAATG
AAGCCATCAGTAGACATCCCGTACAATTTGACGAGCTGTATCGCAACCTAGTACGTGCAGGCGAAAGCGCCGGTGTGCTG
GACACCGTGCTGGATACTGTGGCGACCTATAAGGAAAATATCGAAGCACTGAAGGGCAAGATCAAGAAGGCCCTATTTTA
TCCTGCAATGGTGATGGCAGTAGCGTTGATCGTCAGCTCCATATTGCTGATCTGGGTGGTACCACAGTTCGAAACGGTAT
TCTCCAGCTTCGGTGCGGAATTGCCTGCATTCACCCAAATGATCGTGAATCTCTCGCGATTCATGGTTTCGTGGTGGCTC
CCAATCCTTTTGGTGGTCCTCGGGTCGGCGGCGGGACTGATCATGGCCTACAAGCGCTCGCCAAAGATGCAGCACCTGTT
TGATCGTCTGATTCTTAAAGTTCCTGTGATTGGCAAGATCATGCACGACAGTTCAATTGCCCGCTTCGCACGGACGACAG
CAGTCACCTTCAAGGCAGGCGTTCCGTTGGTCGAAGCGCTGGGAATCGTCGCGGGCGCGACGGGCAACAAGGTTTACGAG
GAAGCTGTCCTGCGGATGCGCGATGACGTGTCTGTAGGCTACCCTGTCAATCTTTCAATGAAGCAGGTCAACCTGTTTCC
GCACATGGTGATCCAGATGACTGCGATTGGTGAAGAAGCCGGTGCACTGGATGCCATGCTGTTCAAGGTAGCGGAATACT
TCGAGCAAGAAGTCAACAACGCTGTTGATGCTCTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTTATCGGCACCATC
GTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTTGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.286

0.51
  pilC Legionella pneumophila strain ERS1305867

51.128

95

0.486
  pilC Acinetobacter baylyi ADP1

49.507

96.667

0.479
  pilC Acinetobacter baumannii D1279779

48.148

96.429

0.464
  pilG Neisseria gonorrhoeae MS11

43.424

95.952

0.417
  pilG Neisseria meningitidis 44/76-A

43.424

95.952

0.417
  pilC Vibrio cholerae strain A1552

39.163

96.667

0.379
  pilC Vibrio campbellii strain DS40M4

39.552

95.714

0.379
  pilC Thermus thermophilus HB27

38.366

96.19

0.369

Multiple sequence alignment