Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ13_RS14500 Genome accession   NZ_CP167859
Coordinates   3372273..3373667 (+) Length   464 a.a.
NCBI ID   WP_372372250.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1638     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3367698..3383279 3372273..3373667 within 0


Gene organization within MGE regions


Location: 3367698..3383279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ13_RS14480 (ACCQ13_14480) - 3367698..3368078 (+) 381 WP_372372247.1 hypothetical protein -
  ACCQ13_RS14485 (ACCQ13_14485) sucD 3368196..3369071 (-) 876 WP_104604276.1 succinate--CoA ligase subunit alpha -
  ACCQ13_RS14490 (ACCQ13_14490) sucC 3369096..3370265 (-) 1170 WP_104604278.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ13_RS14495 (ACCQ13_14495) - 3370500..3372113 (+) 1614 WP_104604280.1 PAS domain-containing sensor histidine kinase -
  ACCQ13_RS14500 (ACCQ13_14500) pilR 3372273..3373667 (+) 1395 WP_372372250.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ13_RS14505 (ACCQ13_14505) pilB 3374491..3376227 (-) 1737 WP_372372254.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ13_RS14510 (ACCQ13_14510) - 3376321..3376929 (-) 609 WP_372372259.1 class I SAM-dependent methyltransferase -
  ACCQ13_RS14515 (ACCQ13_14515) - 3376922..3377962 (-) 1041 WP_372372261.1 glycosyltransferase family 2 protein -
  ACCQ13_RS14520 (ACCQ13_14520) - 3377959..3378756 (-) 798 WP_372372263.1 glycosyltransferase -
  ACCQ13_RS14525 (ACCQ13_14525) - 3378760..3379140 (-) 381 WP_372372265.1 SMR family transporter -
  ACCQ13_RS14530 (ACCQ13_14530) - 3379467..3379880 (+) 414 WP_372372267.1 pilin -
  ACCQ13_RS14535 (ACCQ13_14535) - 3381200..3381391 (-) 192 WP_372372269.1 hypothetical protein -
  ACCQ13_RS14540 (ACCQ13_14540) - 3381392..3381907 (+) 516 WP_372372271.1 hypothetical protein -
  ACCQ13_RS14545 (ACCQ13_14545) pilC 3382017..3383279 (+) 1263 WP_372372273.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50211.67 Da        Isoelectric Point: 6.5834

>NTDB_id=1039920 ACCQ13_RS14500 WP_372372250.1 3372273..3373667(+) (pilR) [Xanthomonas sp. NCPPB 1638]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEISKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGASTAMESLRATIAKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAANGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGNLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLATGPGTAV
IEPREAVVDIDPTSAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1039920 ACCQ13_RS14500 WP_372372250.1 3372273..3373667(+) (pilR) [Xanthomonas sp. NCPPB 1638]
ATGAACGAACCGAAAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTTGTTCTCACCCTGGGGCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAGCAACCCCTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCTCCAAGCATTACCCGCAGACACCGGTGGCG
ATGATTACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCCGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCCCCGGCGCCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGCCTCCACCGCGATGGAGAGCCTGCGCGCCACCATCGCCAAGGTCGCACGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCGCGCACCATCCACGAACAGGGCGC
GCGCGCCGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCACATGCCGACAAGCCCGGCCTGTTCCAGGCCGCAAATGGCGGCACCCTGTTCCTGGAC
GAAGTAGCCGAGCTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGTGCCATCCAGGAAAAGTCGGTACGCCCGGTCGGCGC
CTCCAGCGAATCGCTGGTCGATGTGCGCATCCTTTCGGCCACGCACAAGGACCTGGGCAACCTGGTTTCCGACGGCCGCT
TCCGGCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCGGCCGCCATCATCGCGCGGCTCGCGCACAGCCACGGGCGGCCGATCCCGCTCTTGACGCCTTCGGCCCTGGA
CGCGCTGGACCAATACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTGGCAACCGGCCCCGGCACTGCCGTC
ATCGAGCCACGCGAAGCGGTGGTCGACATCGACCCCACCTCGGCCGCCCTGCCCTCCTACATCGAACAACTCGAACGCGC
CGCAATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCCGGACCGCCGCCCAACTGGGCATCACGTTTCGCGCGC
TGCGTTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.043

99.138

0.625
  pilR Acinetobacter baumannii strain A118

49.569

100

0.496

Multiple sequence alignment