Detailed information NTG1039921

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: ACCQ13_RS14505
• Genome accession: NZ_CP167859
• Coordinates: 3374491..3376227 (-)
• Length: 578 a.a.
• NCBI ID: WP_372372254.1
• Uniprot ID: -
• Organism: Xanthomonas sp. NCPPB 1638
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3367698..3383279	3374491..3376227	within	0

Gene organization within MGE regions

Location: 3367698..3383279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCQ13_RS14480 (ACCQ13_14480)	-	3367698..3368078 (+)	381	WP_372372247.1	hypothetical protein	-
ACCQ13_RS14485 (ACCQ13_14485)	sucD	3368196..3369071 (-)	876	WP_104604276.1	succinate--CoA ligase subunit alpha	-
ACCQ13_RS14490 (ACCQ13_14490)	sucC	3369096..3370265 (-)	1170	WP_104604278.1	ADP-forming succinate--CoA ligase subunit beta	-
ACCQ13_RS14495 (ACCQ13_14495)	-	3370500..3372113 (+)	1614	WP_104604280.1	PAS domain-containing sensor histidine kinase	-
ACCQ13_RS14500 (ACCQ13_14500)	pilR	3372273..3373667 (+)	1395	WP_372372250.1	sigma-54-dependent transcriptional regulator	Regulator
ACCQ13_RS14505 (ACCQ13_14505)	pilB	3374491..3376227 (-)	1737	WP_372372254.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACCQ13_RS14510 (ACCQ13_14510)	-	3376321..3376929 (-)	609	WP_372372259.1	class I SAM-dependent methyltransferase	-
ACCQ13_RS14515 (ACCQ13_14515)	-	3376922..3377962 (-)	1041	WP_372372261.1	glycosyltransferase family 2 protein	-
ACCQ13_RS14520 (ACCQ13_14520)	-	3377959..3378756 (-)	798	WP_372372263.1	glycosyltransferase	-
ACCQ13_RS14525 (ACCQ13_14525)	-	3378760..3379140 (-)	381	WP_372372265.1	SMR family transporter	-
ACCQ13_RS14530 (ACCQ13_14530)	-	3379467..3379880 (+)	414	WP_372372267.1	pilin	-
ACCQ13_RS14535 (ACCQ13_14535)	-	3381200..3381391 (-)	192	WP_372372269.1	hypothetical protein	-
ACCQ13_RS14540 (ACCQ13_14540)	-	3381392..3381907 (+)	516	WP_372372271.1	hypothetical protein	-
ACCQ13_RS14545 (ACCQ13_14545)	pilC	3382017..3383279 (+)	1263	WP_372372273.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 578 a.a.
• Molecular weight: 62935.03 Da
• Isoelectric Point: 5.9527

>NTDB_id=1039921 ACCQ13_RS14505 WP_372372254.1 3374491..3376227(-) (pilB) [Xanthomonas sp. NCPPB 1638]
MNTAVTTNLVGITGIARRLVQDGALDESAARGAMEQAAQAKVPLPQWFSERKLVSAAQLAAANAVEFGMPLMDVSVFDAN
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNASLGSSLG
SDDEEMGDLDISTGDEDMGAGGDAGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLSQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEADQQK
LFLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKTSLP
EHALLAEGFTQQQIDQGITLYEAVGCDDCTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALM
KAAHGVTSLAEINRVTKD

Nucleotide

• Length: 1737 bp

>NTDB_id=1039921 ACCQ13_RS14505 WP_372372254.1 3374491..3376227(-) (pilB) [Xanthomonas sp. NCPPB 1638]
ATGAATACCGCCGTTACGACAAATCTGGTTGGTATAACAGGCATCGCACGCCGCCTGGTGCAGGATGGCGCACTCGATGA
ATCCGCTGCCCGCGGTGCAATGGAGCAAGCTGCACAGGCAAAAGTTCCGTTGCCACAGTGGTTCTCCGAGAGGAAATTAG
TATCTGCTGCCCAATTAGCTGCAGCAAACGCAGTCGAGTTCGGCATGCCGTTGATGGATGTGTCAGTTTTCGACGCTAAC
CAGAATGCAGTCAAATTAGTCAGCGAAGAGTTGCTCCAGAAACATCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTT
GTTCGTGGGGGTGAGCAACCCTACCCAGACTCGGGCGCTGGATGACATCAAGTTTCATACGAACCTGGTGGTCGAGCCGA
TCCTGGTGGACGAGGACCAGATTCGTCGCACCTTGGAACAATGGCAGGCCAGCAATGCATCGCTTGGTTCGTCGCTGGGA
AGCGATGACGAAGAGATGGGCGATCTGGACATCTCCACCGGCGACGAAGACATGGGGGCCGGCGGGGATGCCGGGGTCGA
TGCCAAGGGTGATGACACGCCGGTGGTGAAATTCGTCAACAAGGTGTTGGTGGATGCGATCCGGCGGGGAGCCTCCGATA
TCCATTTCGAGCCTTATGAAGACGACTACCGTGTTCGCTTGCGCATCGATGGGCTGCTGAAGAACGTGGCCAAGGCGCCG
GTGAAGCTGAGCCAGCGGATTGCGGCGCGGTTGAAGGTGATGTCGCAGCTGGATATCGCCGAAAAGCGGGTGCCGCAGGA
TGGGCGCATCAAGCTTAATCTGTCCAAGACCAAACAGATCGACTTCCGTGTGAGTACCTTGCCGACGCTGTTCGGCGAGA
AGGTGGTGCTACGTATCCTGGATGGCAGTGCGGCCAAGCTGGGGATCGAGAAGCTAGGTTACGAGGCGGACCAGCAGAAG
CTGTTCCTGGATGCGATCCACAAGCCCTACGGGATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCCTT
GTATACGGCGCTGGGTATCCTCAACGATGAGACGCGCAACATCTCTACTGCCGAGGATCCGGTTGAAATTCGCCTGCCTG
GCGTCAATCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTTGCGGCGGCCTTGCGCTCGTTCCTGCGCCAGGACCCT
GACATCATCATGGTCGGCGAAATTCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGCCATATGGT
GCTGTCCACGTTGCATACCAACGATGCGCCACAGACCATCGCGCGCTTGATGAACATGGGCATTGCGCCGTACAACATCA
CCTCGTCGGTGACCTTGGTCATTGCGCAGCGCCTGGCGCGGCGGTTGTGCAACAACTGCAAGCGCAAGACCAGCTTGCCA
GAGCATGCGTTGCTGGCCGAAGGGTTTACGCAACAGCAGATCGACCAGGGCATTACGCTGTATGAGGCGGTCGGTTGCGA
TGACTGCACCGAGGGCTACAAGGGCCGTACGGGTATCTACCAGGTCATGCCGATGACCGACGAGATCGGTGCGATCGTGC
TGGAAGGCGGCAATGCGATGCAGATCGCCGAGGCTGCGCAGAAGATCGGTATCCGCGACTTGCGGCAGTCGGCCCTGATG
AAGGCCGCGCATGGGGTGACCAGCCTGGCGGAGATCAATCGGGTGACCAAGGACTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (201-468)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (50-153)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	55.634	98.27	0.547
pilB	Acinetobacter baylyi ADP1	55.282	98.27	0.543
pilB	Legionella pneumophila strain ERS1305867	51.993	99.827	0.519
pilB	Vibrio cholerae strain A1552	48.522	99.481	0.483
pilF	Neisseria gonorrhoeae MS11	48.944	98.27	0.481
pilB	Vibrio campbellii strain DS40M4	45.951	98.27	0.452
pilB	Vibrio parahaemolyticus RIMD 2210633	45.922	97.578	0.448