Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABQ179_RS05725 Genome accession   NZ_CP167817
Coordinates   1341023..1342282 (-) Length   419 a.a.
NCBI ID   WP_311238931.1    Uniprot ID   -
Organism   Xanthomonas dyei strain WHRI 5755     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1336023..1347282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ179_RS05705 (ABQ179_005705) - 1336152..1336469 (-) 318 WP_316685821.1 DUF1153 domain-containing protein -
  ABQ179_RS05710 (ABQ179_005710) - 1336518..1339352 (-) 2835 WP_372469494.1 hypothetical protein -
  ABQ179_RS05715 (ABQ179_005715) coaE 1339534..1340139 (-) 606 WP_104616295.1 dephospho-CoA kinase -
  ABQ179_RS05720 (ABQ179_005720) - 1340153..1341016 (-) 864 WP_055848873.1 A24 family peptidase -
  ABQ179_RS05725 (ABQ179_005725) pilC 1341023..1342282 (-) 1260 WP_311238931.1 type II secretion system F family protein Machinery gene
  ABQ179_RS05730 (ABQ179_005730) - 1342625..1343032 (+) 408 WP_349811581.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABQ179_RS05735 (ABQ179_005735) pilB 1343349..1345070 (+) 1722 WP_104616299.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQ179_RS05740 (ABQ179_005740) pilR 1345376..1346770 (-) 1395 WP_170068658.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45983.21 Da        Isoelectric Point: 10.2922

>NTDB_id=1039546 ABQ179_RS05725 WP_311238931.1 1341023..1342282(-) (pilC) [Xanthomonas dyei strain WHRI 5755]
MSVARNAVKNQPVSRSTSLQQPFVWEGTDKRGVKMKGEQTARNANMLRAELRRQGITPSVVKAKPKPLFGAAGKKISSKD
ISFFSRQMATMMKSGIPIVSSLEIIGEGHKNPRMKQMVGQIRSDIEGGSSLHESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVAVAIVVSAILLIFVVPQFEEVFKSFGAELPAFTQIIVNASRFMVAYWWL
LLLIAAGSFFGFMFAYKRSPRMQHGMDRLILKFPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVMRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFLGTVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1039546 ABQ179_RS05725 WP_311238931.1 1341023..1342282(-) (pilC) [Xanthomonas dyei strain WHRI 5755]
ATGTCAGTTGCCCGTAACGCCGTCAAAAATCAGCCTGTAAGCAGGAGCACATCGCTACAGCAACCGTTCGTGTGGGAAGG
AACGGACAAGCGTGGCGTCAAGATGAAAGGAGAGCAGACTGCCCGCAATGCGAACATGTTGCGTGCAGAGCTCCGCCGCC
AAGGGATTACGCCCAGTGTCGTCAAGGCTAAACCGAAGCCTCTTTTCGGCGCTGCAGGGAAAAAAATCAGCTCCAAGGAT
ATCTCCTTCTTCAGTCGCCAGATGGCGACCATGATGAAGTCTGGCATCCCTATCGTGAGTTCACTTGAGATCATTGGTGA
GGGCCATAAGAATCCACGGATGAAACAGATGGTTGGCCAGATAAGGTCCGACATCGAGGGCGGCTCTTCGCTGCACGAAT
CCATCTCCAAGCATCCTGTCCAATTTGACGAACTCTACCGCAACCTGGTCCGGGCAGGCGAAGGCGCAGGCGTGCTGGAA
ACAGTGTTGGATACCGTGGCGACTTACAAGGAAAACATCGAAGCCCTGAAGGGCAAAATCAAGAAAGCACTTTTTTATCC
GGCAATGGTTGTAGCGGTCGCCATTGTTGTGAGTGCAATCCTCTTGATTTTTGTGGTGCCGCAGTTTGAAGAAGTCTTCA
AAAGTTTCGGCGCAGAACTGCCTGCATTCACCCAGATCATCGTCAACGCCTCACGCTTCATGGTGGCCTACTGGTGGCTA
CTGCTGTTGATTGCGGCAGGGTCTTTTTTTGGCTTCATGTTTGCTTACAAACGCTCGCCACGCATGCAGCATGGGATGGA
CAGGCTGATCCTGAAATTCCCAATTATTGGCCAGATCATGCATAACAGTTCGATCGCCCGGTTTGCCCGCACTACAGCGG
TTACCTTTAAGGCGGGCGTTCCCCTGGTTGAGGCGCTAGGCATTGTGGCTGGCGCCACGGGCAACAAGGTCTACGAAGAA
GCTGTAATGAGAATGCGCGATGATGTCTCCGTAGGCTACCCAGTCAACATGGCGATGAAGCAAGTCAATCTGTTCCCGCA
CATGGTGGTGCAGATGACGGCGATCGGTGAAGAGGCCGGCGCTCTAGACACCATGTTGTTCAAGGTCGCCGAATATTTCG
AGCAGGAGGTCAACAATGCCGTCGACGCGCTTAGCAGCTTGATGGAGCCGTTGATCATGGTTTTCTTGGGCACCGTGGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Legionella pneumophila strain ERS1305867

52.778

94.511

0.499
  pilC Acinetobacter baylyi ADP1

50.985

96.897

0.494
  pilC Acinetobacter baumannii D1279779

51.385

94.749

0.487
  pilG Neisseria gonorrhoeae MS11

43.932

98.329

0.432
  pilG Neisseria meningitidis 44/76-A

43.341

98.568

0.427
  pilC Vibrio cholerae strain A1552

42.317

94.749

0.401
  pilC Vibrio campbellii strain DS40M4

38.916

96.897

0.377
  pilC Thermus thermophilus HB27

37.94

94.988

0.36

Multiple sequence alignment