Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQ179_RS05740 Genome accession   NZ_CP167817
Coordinates   1345376..1346770 (-) Length   464 a.a.
NCBI ID   WP_170068658.1    Uniprot ID   -
Organism   Xanthomonas dyei strain WHRI 5755     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340376..1351770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ179_RS05725 (ABQ179_005725) pilC 1341023..1342282 (-) 1260 WP_311238931.1 type II secretion system F family protein Machinery gene
  ABQ179_RS05730 (ABQ179_005730) - 1342625..1343032 (+) 408 WP_349811581.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABQ179_RS05735 (ABQ179_005735) pilB 1343349..1345070 (+) 1722 WP_104616299.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQ179_RS05740 (ABQ179_005740) pilR 1345376..1346770 (-) 1395 WP_170068658.1 sigma-54 dependent transcriptional regulator Regulator
  ABQ179_RS05750 (ABQ179_005750) - 1347268..1348884 (-) 1617 WP_104616301.1 PAS domain-containing sensor histidine kinase -
  ABQ179_RS05755 (ABQ179_005755) sucC 1349117..1350286 (+) 1170 WP_104616302.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQ179_RS05760 (ABQ179_005760) sucD 1350311..1351186 (+) 876 WP_349811580.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50186.62 Da        Isoelectric Point: 6.5837

>NTDB_id=1039548 ABQ179_RS05740 WP_170068658.1 1345376..1346770(-) (pilR) [Xanthomonas dyei strain WHRI 5755]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1039548 ABQ179_RS05740 WP_170068658.1 1345376..1346770(-) (pilR) [Xanthomonas dyei strain WHRI 5755]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCCTACGACCTGTGCCTGA
CCGACATGCGGCTGCCCGACGGCAACGGCATCGAACTGGTTACCGAAATCGCAAAGCACTATCCGCAAACGCCGGTCGCC
ATGATCACCGCGTTCGGCAGCATGGATCTGGCAGTGGAGGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGTGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCACCGCCCCCGCCGC
CGCCCGAACAGGCCAGCCGTCTGCTTGGCGATTCGACCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGT
AGCCAGGCGCCGGTGTATATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCACGCACCATCCACGAGCAAGGCGC
CCGCGCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AAAAGGGCAGCTTCACCGGCGCGCATGCCGACAAACCCGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAATTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCGGCGAAACGCTGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TCCGGCATGACCTTTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCGCGCCTGGCGCGCAGCCACGGCCGGCCGATTCCACTGCTGACCCAATCAGCCCTGGA
CGCGCTGAATACTTACGGCTTTCCGGGCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTACCCGCTCACGGCGGCCACCGCCTAGCCGCGACGCCCGGCAGCGCAGCG
GTCGAACCGCGCGAAGCCGTGGTGGATATCGACCCCGCGTCGTCTGCACTACCCTCTTACATCGAGCAACTCGAGCGCGC
CGCGATCCAGAAAGCTTTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCCGCGCAGCTGGGCATTACCTTTCGGGCGC
TGCGTTACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631
  pilR Acinetobacter baumannii strain A118

48.707

100

0.487

Multiple sequence alignment