Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QUF32_RS00175 Genome accession   NZ_AP028128
Coordinates   38164..39279 (+) Length   371 a.a.
NCBI ID   WP_172567409.1    Uniprot ID   -
Organism   Vibrio fluvialis strain IDH05335     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33164..44279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF32_RS00155 (KKIDH5335_00310) rsmB 34097..35377 (-) 1281 WP_286235969.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QUF32_RS00160 (KKIDH5335_00320) fmt 35428..36375 (-) 948 WP_024374491.1 methionyl-tRNA formyltransferase -
  QUF32_RS00165 (KKIDH5335_00330) def 36394..36906 (-) 513 WP_020332568.1 peptide deformylase -
  QUF32_RS00170 (KKIDH5335_00340) - 37046..38164 (+) 1119 WP_286235970.1 LysM peptidoglycan-binding domain-containing protein -
  QUF32_RS00175 (KKIDH5335_00350) dprA 38164..39279 (+) 1116 WP_172567409.1 DNA-processing protein DprA Machinery gene
  QUF32_RS00180 (KKIDH5335_00360) - 39282..39758 (+) 477 WP_020332565.1 DUF494 family protein -
  QUF32_RS00185 (KKIDH5335_00370) - 39789..40376 (+) 588 WP_024374494.1 type I DNA topoisomerase -
  QUF32_RS00190 (KKIDH5335_00380) - 40410..41543 (-) 1134 WP_202661057.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QUF32_RS00195 (KKIDH5335_00390) purE 41547..42032 (-) 486 WP_020332562.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QUF32_RS00200 (KKIDH5335_00400) - 42231..42788 (+) 558 WP_154183775.1 L-threonylcarbamoyladenylate synthase -
  QUF32_RS00205 (KKIDH5335_00410) hemF 42808..43722 (+) 915 WP_199466076.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40513.98 Da        Isoelectric Point: 6.2302

>NTDB_id=103925 QUF32_RS00175 WP_172567409.1 38164..39279(+) (dprA) [Vibrio fluvialis strain IDH05335]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSEQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFAAQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=103925 QUF32_RS00175 WP_172567409.1 38164..39279(+) (dprA) [Vibrio fluvialis strain IDH05335]
ATGCTCGAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACACTGCAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGGCTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGAGCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATCGTCGGCAGTCGCAACGCCAGTATCGACAGTCAACAAATCGCTCATCAGT
TTGCCGCGCAATTGGTCGAGCACGGCTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATAGCGGTGCTGGGCTCGGGGCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.42

100

0.644
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

47.34

100

0.48
  dprA Legionella pneumophila strain ERS1305867

43.407

98.113

0.426
  dprA Neisseria meningitidis strain C311

37.688

100

0.404
  dprA Neisseria meningitidis MC58

37.688

100

0.404
  dprA Haemophilus influenzae Rd KW20

43.713

90.027

0.394
  dprA Neisseria gonorrhoeae MS11

36.181

100

0.388
  dprA Acinetobacter baumannii D1279779

42.216

90.027

0.38
  dprA Neisseria gonorrhoeae strain FA1090

35.696

100

0.38
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377

Multiple sequence alignment