Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACCP96_RS05185 | Genome accession | NZ_CP167226 |
| Coordinates | 1240594..1241850 (-) | Length | 418 a.a. |
| NCBI ID | WP_057685777.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. fici strain NCPPB 3886 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1235594..1246850
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCP96_RS05175 (ACCP96_05175) | coaE | 1239102..1239710 (-) | 609 | WP_078517255.1 | dephospho-CoA kinase | - |
| ACCP96_RS05180 (ACCP96_05180) | - | 1239724..1240587 (-) | 864 | WP_016849610.1 | A24 family peptidase | - |
| ACCP96_RS05185 (ACCP96_05185) | pilC | 1240594..1241850 (-) | 1257 | WP_057685777.1 | type II secretion system F family protein | Machinery gene |
| ACCP96_RS05190 (ACCP96_05190) | pilE | 1242177..1242617 (+) | 441 | WP_218533820.1 | pilin | Machinery gene |
| ACCP96_RS05195 (ACCP96_05195) | - | 1242695..1243129 (+) | 435 | WP_078590286.1 | pilin | - |
| ACCP96_RS05200 (ACCP96_05200) | pilB | 1243192..1244928 (+) | 1737 | WP_122272420.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACCP96_RS05205 (ACCP96_05205) | pilB | 1245206..1245325 (+) | 120 | WP_136732873.1 | pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45925.32 Da Isoelectric Point: 10.3003
>NTDB_id=1038976 ACCP96_RS05185 WP_057685777.1 1240594..1241850(-) (pilC) [Xanthomonas campestris pv. fici strain NCPPB 3886]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
Nucleotide
Download Length: 1257 bp
>NTDB_id=1038976 ACCP96_RS05185 WP_057685777.1 1240594..1241850(-) (pilC) [Xanthomonas campestris pv. fici strain NCPPB 3886]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAACGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTTAAGATGAAAGGGGAGCAGCAGGCCCGCAATGCAAACATGTTGCGCGCAGAGCTTCGTCGTC
AGGGAATCACGCCCACAGTTGTAAAGACTAAACCAAAACCACTTTTCGGCGCTGCGGGCAAAAAAATTTCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCCGGAGTCCCCATAGTTGGCGCACTTGAAATTATCGGTGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAACCTGGTTCGCGCGGGCGAAGGCGCTGGCGTATTGGAA
ACTGTTCTAGATACAGTTGCGAACTATAAAGAAAATATCGAAGCCCTTAAAGGCAAAATCAAAAAAGCCCTGTTTTATCC
CGCCATGGTAATGGCCGTCGCAATTATTGTCAGCGGCATCCTCCTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AGGGATTTGGAGCAGAGCTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCGAGTGTCGCAGCGATAGCCGGTTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTCTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAACAGCTCCATTGCTCGATTTGCCCGAACCACGGCGG
TCACATTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGCATTGTTGCCGGCGCGACTGGCAACAAGGTCTATGAGGAA
GCTGTACTGCGGATGCGCGACGACGTCTCTGTGGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTTCCTCA
TATGGTGGTTCAAATGACATCCATTGGCGAGGAAGCGGGCGCTCTTGATGCCATGCTATTTAAAGTAGCCGAGTATTTTG
AGCAGGAAGTGAATAACGCCGTGGACGCGCTGAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGTATGGTGATCGGCATGTATCTCCCAATTTTCAAACTTGGCTCGGTGGTATAA
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAACGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTTAAGATGAAAGGGGAGCAGCAGGCCCGCAATGCAAACATGTTGCGCGCAGAGCTTCGTCGTC
AGGGAATCACGCCCACAGTTGTAAAGACTAAACCAAAACCACTTTTCGGCGCTGCGGGCAAAAAAATTTCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCCGGAGTCCCCATAGTTGGCGCACTTGAAATTATCGGTGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAACCTGGTTCGCGCGGGCGAAGGCGCTGGCGTATTGGAA
ACTGTTCTAGATACAGTTGCGAACTATAAAGAAAATATCGAAGCCCTTAAAGGCAAAATCAAAAAAGCCCTGTTTTATCC
CGCCATGGTAATGGCCGTCGCAATTATTGTCAGCGGCATCCTCCTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AGGGATTTGGAGCAGAGCTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCGAGTGTCGCAGCGATAGCCGGTTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTCTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAACAGCTCCATTGCTCGATTTGCCCGAACCACGGCGG
TCACATTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGCATTGTTGCCGGCGCGACTGGCAACAAGGTCTATGAGGAA
GCTGTACTGCGGATGCGCGACGACGTCTCTGTGGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTTCCTCA
TATGGTGGTTCAAATGACATCCATTGGCGAGGAAGCGGGCGCTCTTGATGCCATGCTATTTAAAGTAGCCGAGTATTTTG
AGCAGGAAGTGAATAACGCCGTGGACGCGCTGAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGTATGGTGATCGGCATGTATCTCCCAATTTTCAAACTTGGCTCGGTGGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baylyi ADP1 |
52.854 |
96.411 |
0.51 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.535 |
94.737 |
0.507 |
| pilC | Acinetobacter baumannii D1279779 |
51.861 |
96.411 |
0.5 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.232 |
97.129 |
0.498 |
| pilG | Neisseria gonorrhoeae MS11 |
45.5 |
95.694 |
0.435 |
| pilG | Neisseria meningitidis 44/76-A |
45 |
95.694 |
0.431 |
| pilC | Vibrio cholerae strain A1552 |
42.677 |
94.737 |
0.404 |
| pilC | Vibrio campbellii strain DS40M4 |
39.646 |
94.737 |
0.376 |
| pilC | Thermus thermophilus HB27 |
37.94 |
95.215 |
0.361 |