Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACCP84_RS15745 | Genome accession | NZ_CP167201 |
| Coordinates | 3651753..3653015 (+) | Length | 420 a.a. |
| NCBI ID | WP_078515376.1 | Uniprot ID | - |
| Organism | Xanthomonas axonopodis pv. ricini strain NCPPB 2369 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3646753..3658015
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCP84_RS15725 (ACCP84_15775) | pilR | 3647036..3648490 (+) | 1455 | WP_011348337.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ACCP84_RS15730 (ACCP84_15780) | pilB | 3648712..3648831 (-) | 120 | WP_136732873.1 | pilus assembly protein | Machinery gene |
| ACCP84_RS15735 (ACCP84_15785) | pilB | 3649109..3650842 (-) | 1734 | WP_372170877.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACCP84_RS15740 (ACCP84_15790) | pilA2 | 3650980..3651408 (-) | 429 | WP_039587436.1 | pilin | Machinery gene |
| ACCP84_RS15745 (ACCP84_15795) | pilC | 3651753..3653015 (+) | 1263 | WP_078515376.1 | type II secretion system F family protein | Machinery gene |
| ACCP84_RS15750 (ACCP84_15800) | - | 3653022..3653885 (+) | 864 | WP_008576868.1 | A24 family peptidase | - |
| ACCP84_RS15755 (ACCP84_15805) | coaE | 3653899..3654510 (+) | 612 | WP_277572157.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 46118.61 Da Isoelectric Point: 10.2556
>NTDB_id=1038839 ACCP84_RS15745 WP_078515376.1 3651753..3653015(+) (pilC) [Xanthomonas axonopodis pv. ricini strain NCPPB 2369]
MSVARNAIKKQTVDRSAGQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSVVKPKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRADIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMLFVVAGTIIGFIFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDSMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
MSVARNAIKKQTVDRSAGQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSVVKPKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRADIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMLFVVAGTIIGFIFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDSMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1263 bp
>NTDB_id=1038839 ACCP84_RS15745 WP_078515376.1 3651753..3653015(+) (pilC) [Xanthomonas axonopodis pv. ricini strain NCPPB 2369]
ATGTCTGTCGCACGCAATGCCATTAAGAAGCAAACGGTGGACCGTAGTGCCGGTCAACAGCTACAACTGTTCCTCTGGGA
AGGAACGGACAAGCGCGGAATCAAGATGAAAGGCGAGCAGACTGCGCGCAACATGAACATGTTGCGCGCGGAGCTTCGCC
GTCAAGGCATCAATCCTTCAGTCGTGAAACCCAAGCCCAAGCCGCTTTTTGGCGCTGCAGGCAAGAAAATTACGCCTAAA
GACATCGCATTTTTCAGCCGCCAGATGGCGACTATGATGAAATCTGGAGTGCCTATTGTAGGCTCTCTTGAGATCATCGG
CGAAGGCCACAAAAACCCACGCATGAAAAAGATGGTGGGACAGGTTAGAGCCGATATCGAGGGCGGCTCGTCCCTTTACG
AATCTATCAGTAAACATCCGGTGCAGTTTGACGAACTCTACCGCAATCTTGTGCGAGCAGGTGAAGGCGCAGGCGTTCTA
GAGACTGTATTAGATACGGTTGCAACTTATAAAGAAAACATAGAAGCATTGAAGGGAAAGATCAAAAAGGCTTTATTTTA
TCCAGCCATGGTGATCGCAGTCGCCCTTATTGTCAGCGCCATTCTGCTAATTTTTGTCGTCCCTCAGTTCGAAGAAGTTT
TTAAAGGTTTCGGCGCCGAACTGCCTGCCTTTACCCAAATGATCGTTGGAGCGTCACGATTCATGGTGAGCTACTGGTGG
ATCATGCTGTTTGTTGTAGCAGGCACCATCATTGGGTTCATCTTTGCTTACAAACGCTCCCCGAGCATGCAACATACTAT
GGACAGATTAATATTGAGAGTACCTGTTATCGGTCAGATCATGCATAACAGTTCTATCGCGCGCTTCGCGCGTACGACTG
CCGTTACCTTTAAGGCCGGCGTTCCACTTGTGGAGGCACTAGGCATTGTTGCTGGCGCCACCGGTAATCGCGTCTACGAA
GATGCGGTACTCCGTATGCGCGACGATGTATCTGTGGGTTATCCAGTCAACATGGCAATGAAACAAGTCAACCTGTTTCC
GCACATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGTGCGCTCGATTCAATGCTTTTCAAAGTTGCTGAATACT
TTGAGCAAGAAGTCAACAATGCCGTCGATGCACTGAGCAGCCTGCTCGAGCCGATGATCATGGTCTTCATCGGGGTTGTC
GTAGGCGGCATGGTGATTGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCTGTCGCACGCAATGCCATTAAGAAGCAAACGGTGGACCGTAGTGCCGGTCAACAGCTACAACTGTTCCTCTGGGA
AGGAACGGACAAGCGCGGAATCAAGATGAAAGGCGAGCAGACTGCGCGCAACATGAACATGTTGCGCGCGGAGCTTCGCC
GTCAAGGCATCAATCCTTCAGTCGTGAAACCCAAGCCCAAGCCGCTTTTTGGCGCTGCAGGCAAGAAAATTACGCCTAAA
GACATCGCATTTTTCAGCCGCCAGATGGCGACTATGATGAAATCTGGAGTGCCTATTGTAGGCTCTCTTGAGATCATCGG
CGAAGGCCACAAAAACCCACGCATGAAAAAGATGGTGGGACAGGTTAGAGCCGATATCGAGGGCGGCTCGTCCCTTTACG
AATCTATCAGTAAACATCCGGTGCAGTTTGACGAACTCTACCGCAATCTTGTGCGAGCAGGTGAAGGCGCAGGCGTTCTA
GAGACTGTATTAGATACGGTTGCAACTTATAAAGAAAACATAGAAGCATTGAAGGGAAAGATCAAAAAGGCTTTATTTTA
TCCAGCCATGGTGATCGCAGTCGCCCTTATTGTCAGCGCCATTCTGCTAATTTTTGTCGTCCCTCAGTTCGAAGAAGTTT
TTAAAGGTTTCGGCGCCGAACTGCCTGCCTTTACCCAAATGATCGTTGGAGCGTCACGATTCATGGTGAGCTACTGGTGG
ATCATGCTGTTTGTTGTAGCAGGCACCATCATTGGGTTCATCTTTGCTTACAAACGCTCCCCGAGCATGCAACATACTAT
GGACAGATTAATATTGAGAGTACCTGTTATCGGTCAGATCATGCATAACAGTTCTATCGCGCGCTTCGCGCGTACGACTG
CCGTTACCTTTAAGGCCGGCGTTCCACTTGTGGAGGCACTAGGCATTGTTGCTGGCGCCACCGGTAATCGCGTCTACGAA
GATGCGGTACTCCGTATGCGCGACGATGTATCTGTGGGTTATCCAGTCAACATGGCAATGAAACAAGTCAACCTGTTTCC
GCACATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGTGCGCTCGATTCAATGCTTTTCAAAGTTGCTGAATACT
TTGAGCAAGAAGTCAACAATGCCGTCGATGCACTGAGCAGCCTGCTCGAGCCGATGATCATGGTCTTCATCGGGGTTGTC
GTAGGCGGCATGGTGATTGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.66 |
94.524 |
0.517 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.383 |
95 |
0.507 |
| pilC | Acinetobacter baylyi ADP1 |
51.493 |
95.714 |
0.493 |
| pilC | Acinetobacter baumannii D1279779 |
50.124 |
95.952 |
0.481 |
| pilG | Neisseria gonorrhoeae MS11 |
44.638 |
95.476 |
0.426 |
| pilG | Neisseria meningitidis 44/76-A |
44.14 |
95.476 |
0.421 |
| pilC | Vibrio campbellii strain DS40M4 |
40.931 |
97.143 |
0.398 |
| pilC | Vibrio cholerae strain A1552 |
40.75 |
95.238 |
0.388 |