Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCP84_RS15725 Genome accession   NZ_CP167201
Coordinates   3647036..3648490 (+) Length   484 a.a.
NCBI ID   WP_011348337.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. ricini strain NCPPB 2369     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3642036..3653490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP84_RS15705 (ACCP84_15755) - 3642339..3642683 (-) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -
  ACCP84_RS15710 (ACCP84_15760) sucD 3642854..3643729 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACCP84_RS15715 (ACCP84_15765) sucC 3643754..3644923 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCP84_RS15720 (ACCP84_15770) - 3645155..3646768 (+) 1614 WP_372170875.1 PAS domain-containing sensor histidine kinase -
  ACCP84_RS15725 (ACCP84_15775) pilR 3647036..3648490 (+) 1455 WP_011348337.1 sigma-54 dependent transcriptional regulator Regulator
  ACCP84_RS15730 (ACCP84_15780) pilB 3648712..3648831 (-) 120 WP_136732873.1 pilus assembly protein Machinery gene
  ACCP84_RS15735 (ACCP84_15785) pilB 3649109..3650842 (-) 1734 WP_372170877.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP84_RS15740 (ACCP84_15790) pilA2 3650980..3651408 (-) 429 WP_039587436.1 pilin Machinery gene
  ACCP84_RS15745 (ACCP84_15795) pilC 3651753..3653015 (+) 1263 WP_078515376.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52491.26 Da        Isoelectric Point: 6.8289

>NTDB_id=1038835 ACCP84_RS15725 WP_011348337.1 3647036..3648490(+) (pilR) [Xanthomonas axonopodis pv. ricini strain NCPPB 2369]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1038835 ACCP84_RS15725 WP_011348337.1 3647036..3648490(+) (pilR) [Xanthomonas axonopodis pv. ricini strain NCPPB 2369]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTTGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCATAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACTTGTACTAC
CGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCTAACGGAGGTGCCGCGGCCGAACCGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment