Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACB088_RS14565 Genome accession   NZ_CP167121
Coordinates   3081936..3083162 (+) Length   408 a.a.
NCBI ID   WP_198496440.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3076936..3088162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS14530 (ACB088_14530) rimP 3077604..3078128 (-) 525 WP_375037296.1 ribosome maturation factor RimP -
  ACB088_RS14550 (ACB088_14550) secG 3078768..3079097 (-) 330 WP_092710024.1 preprotein translocase subunit SecG -
  ACB088_RS14555 (ACB088_14555) tpiA 3079110..3079904 (-) 795 WP_003654580.1 triose-phosphate isomerase -
  ACB088_RS14560 (ACB088_14560) pilB 3080196..3081908 (+) 1713 WP_375037297.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACB088_RS14565 (ACB088_14565) pilC 3081936..3083162 (+) 1227 WP_198496440.1 type II secretion system F family protein Machinery gene
  ACB088_RS14570 (ACB088_14570) pilD 3083162..3084022 (+) 861 WP_375037298.1 prepilin peptidase Machinery gene
  ACB088_RS14575 (ACB088_14575) coaE 3084024..3084620 (+) 597 WP_375037299.1 dephospho-CoA kinase -
  ACB088_RS14580 (ACB088_14580) - 3084617..3085531 (-) 915 WP_375037300.1 DMT family transporter -
  ACB088_RS14585 (ACB088_14585) rlmB 3085567..3086316 (-) 750 WP_004640838.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACB088_RS14590 (ACB088_14590) - 3086419..3086745 (-) 327 WP_003654567.1 pyrimidine/purine nucleoside phosphorylase -
  ACB088_RS14595 (ACB088_14595) - 3086822..3088132 (-) 1311 WP_375037301.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45010.51 Da        Isoelectric Point: 9.9566

>NTDB_id=1038294 ACB088_RS14565 WP_198496440.1 3081936..3083162(+) (pilC) [Acinetobacter sp. RW6]
MTVKKAQLMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGGTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFMEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1038294 ACB088_RS14565 WP_198496440.1 3081936..3083162(+) (pilC) [Acinetobacter sp. RW6]
ATGACTGTCAAAAAGGCACAATTGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAAGGCGTAAAAATTAAGGGGGA
ACTTCCAGCTAAAAATATGGCTTTAGCTAAAGTCACCCTACGCAAACAAGGTGTAACAGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTATCAACGCTCGATATCACGATTTTCACACGACAACTTGCAACC
ATGATGAAAGCTGGTGTTCCACTGGTACAAGGCTTTGAAATTGTGGCGGAAGGTTTAGAAAACCCAGCGATGCGCGAGGT
GGTGCTCGGTATTAAAGGTGAAGTTGAAGGTGGCGGTACTTTTGCCTCAGCTTTAAGAAAGTATCCTCAGCACTTCGACA
AACTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGCTAGATCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCCATGAAGTACCCAGCAACGGTTATTGTAGTTGCTGTAGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTCTTCCAAGACCTGTTTTCTTCCTTTGGCGCAGATTTGCCTGCGTTTA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTAATTGGTGCAATTATTGCT
GCTTTTATGGAAGCTAAAAAGCGCAGTAAAAAATTCCGTGATGGCTTAGACAAACTCACGCTTAAGTTGCCTATCTTTGG
TGATCTTGTTTACAAGGCGATTATTGCCCGCTACAGCCGTACTTTAGCAACCACTTTTGCAGCAGGTGTTCCGCTCATTG
ATGCACTTGAATCAACAGCTGGTGCAACCAATAATGTTATTTATGAACAAGCTGTAATGAAAATTCGTGAAGATGTTGCA
ACAGGTCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTAGATAAAGTTGCCACCTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATTATGGCAATCTTAGGGGTACTTGTAGGCGGTCTGGTTATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

96.814

100

0.968
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

60.453

97.304

0.588
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

45.729

97.549

0.446
  pilG Neisseria meningitidis 44/76-A

45.729

97.549

0.446
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment