Detailed information NTG1038295

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACB088_RS14570
• Genome accession: NZ_CP167121
• Coordinates: 3083162..3084022 (+)
• Length: 286 a.a.
• NCBI ID: WP_375037298.1
• Uniprot ID: -
• Organism: Acinetobacter sp. RW6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3078162..3089022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACB088_RS14550 (ACB088_14550)	secG	3078768..3079097 (-)	330	WP_092710024.1	preprotein translocase subunit SecG	-
ACB088_RS14555 (ACB088_14555)	tpiA	3079110..3079904 (-)	795	WP_003654580.1	triose-phosphate isomerase	-
ACB088_RS14560 (ACB088_14560)	pilB	3080196..3081908 (+)	1713	WP_375037297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACB088_RS14565 (ACB088_14565)	pilC	3081936..3083162 (+)	1227	WP_198496440.1	type II secretion system F family protein	Machinery gene
ACB088_RS14570 (ACB088_14570)	pilD	3083162..3084022 (+)	861	WP_375037298.1	prepilin peptidase	Machinery gene
ACB088_RS14575 (ACB088_14575)	coaE	3084024..3084620 (+)	597	WP_375037299.1	dephospho-CoA kinase	-
ACB088_RS14580 (ACB088_14580)	-	3084617..3085531 (-)	915	WP_375037300.1	DMT family transporter	-
ACB088_RS14585 (ACB088_14585)	rlmB	3085567..3086316 (-)	750	WP_004640838.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACB088_RS14590 (ACB088_14590)	-	3086419..3086745 (-)	327	WP_003654567.1	pyrimidine/purine nucleoside phosphorylase	-
ACB088_RS14595 (ACB088_14595)	-	3086822..3088132 (-)	1311	WP_375037301.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32061.45 Da
• Isoelectric Point: 6.6122

>NTDB_id=1038295 ACB088_RS14570 WP_375037298.1 3083162..3084022(+) (pilD) [Acinetobacter sp. RW6]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWHQECQMLLDPEQPIIDHEKLTLSKPASSCPQCHQT
IRWYQNIPVISWLVLKGKCGHCEHAISMRYPAIELLTMACSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTTPTSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1038295 ACB088_RS14570 WP_375037298.1 3083162..3084022(+) (pilD) [Acinetobacter sp. RW6]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTGTGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCAAAAATGATGGAACAAGATTGGCACCAAGAATGTCAAATGCTACTCG
ATCCTGAACAACCAATCATTGATCATGAAAAACTGACATTAAGTAAGCCTGCTTCATCATGCCCCCAATGTCACCAGACC
ATTCGCTGGTATCAAAATATTCCTGTCATAAGTTGGCTGGTTTTAAAAGGTAAATGTGGGCATTGTGAGCACGCAATTAG
CATGCGCTACCCAGCCATCGAACTATTAACAATGGCATGTTCACTGGTTGTGGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTGACTTGGGTTTTAATTGCTTTAACATTTATTGATTTTGATACTCAGCTGCTACCCGACCGT
TTTACCTTACCTTTGGCCGCACTGGGTTTAGGCATTAATACCTTTAGCATCTACACCACACCCACCTCAGCCATTTGGGG
TTACTTAATTGGTTTTTTATGCCTGTGGATTGTGTATTACCTATTTAAAGTAATTACCGGCAAAGAAGGCATGGGCTACG
GCGACTTTAAGTTGCTTGCGGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCGTATATTGCCAT
TGCTGGCTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	94.406	100	0.944
pilD	Acinetobacter baumannii D1279779	94.056	100	0.941
pilD	Vibrio cholerae strain A1552	52.381	95.455	0.5
pilD	Vibrio campbellii strain DS40M4	52.015	95.455	0.497
pilD	Neisseria gonorrhoeae MS11	45.833	92.308	0.423