Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACB340_RS00725 Genome accession   NZ_CP167005
Coordinates   112276..112671 (+) Length   131 a.a.
NCBI ID   WP_011284430.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107276..117671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB340_RS00695 (ACB340_00695) - 108141..108449 (+) 309 WP_030126458.1 hypothetical protein -
  ACB340_RS00700 (ACB340_00700) proC 108532..109302 (-) 771 WP_023078993.1 pyrroline-5-carboxylate reductase -
  ACB340_RS00705 (ACB340_00705) pepA 109350..110417 (-) 1068 WP_115224519.1 glutamyl aminopeptidase -
  ACB340_RS00710 (ACB340_00710) - 110882..111166 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  ACB340_RS00715 (ACB340_00715) - 111163..111480 (+) 318 WP_002992751.1 thioredoxin family protein -
  ACB340_RS00720 (ACB340_00720) ytpR 111498..112124 (+) 627 WP_011017256.1 YtpR family tRNA-binding protein -
  ACB340_RS00725 (ACB340_00725) ssbA 112276..112671 (+) 396 WP_011284430.1 single-stranded DNA-binding protein Machinery gene
  ACB340_RS00730 (ACB340_00730) - 112931..113572 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  ACB340_RS00735 (ACB340_00735) dusB 113592..114569 (-) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  ACB340_RS00740 (ACB340_00740) hslO 114556..115428 (-) 873 WP_012766459.1 Hsp33 family molecular chaperone HslO -
  ACB340_RS00745 (ACB340_00745) rofA 115575..117068 (-) 1494 WP_011284433.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14801.98 Da        Isoelectric Point: 8.0157

>NTDB_id=1037075 ACB340_RS00725 WP_011284430.1 112276..112671(+) (ssbA) [Streptococcus pyogenes strain Isolate 27]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISIVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1037075 ACB340_RS00725 WP_011284430.1 112276..112671(+) (ssbA) [Streptococcus pyogenes strain Isolate 27]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATTTCAATTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment