Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACA346_RS09745 Genome accession   NZ_CP166970
Coordinates   1919315..1919710 (-) Length   131 a.a.
NCBI ID   WP_289647110.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1914315..1924710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS09725 (ACA346_09725) rpsG 1915612..1916082 (-) 471 WP_105182784.1 30S ribosomal protein S7 -
  ACA346_RS09730 (ACA346_09730) rpsL 1916099..1916512 (-) 414 WP_130555122.1 30S ribosomal protein S12 -
  ACA346_RS09735 (ACA346_09735) groL 1916742..1918364 (-) 1623 WP_277837571.1 chaperonin GroEL -
  ACA346_RS09740 (ACA346_09740) groES 1918463..1918744 (-) 282 WP_217374319.1 co-chaperone GroES -
  ACA346_RS09745 (ACA346_09745) ssbA 1919315..1919710 (-) 396 WP_289647110.1 single-stranded DNA-binding protein Machinery gene
  ACA346_RS09750 (ACA346_09750) - 1920213..1920485 (+) 273 WP_277837568.1 DUF2785 domain-containing protein -
  ACA346_RS09755 (ACA346_09755) ytpR 1920587..1921210 (-) 624 WP_418126811.1 YtpR family tRNA-binding protein -
  ACA346_RS09760 (ACA346_09760) - 1921229..1922185 (-) 957 WP_418126812.1 DUF1002 domain-containing protein -
  ACA346_RS09765 (ACA346_09765) - 1922229..1922549 (-) 321 WP_114866121.1 thioredoxin family protein -
  ACA346_RS09770 (ACA346_09770) - 1922546..1922830 (-) 285 WP_171989715.1 DUF4651 domain-containing protein -
  ACA346_RS09775 (ACA346_09775) pepA 1923043..1924104 (+) 1062 WP_217374324.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14865.74 Da        Isoelectric Point: 5.7930

>NTDB_id=1036449 ACA346_RS09745 WP_289647110.1 1919315..1919710(-) (ssbA) [Streptococcus parasuis strain NX1]
MYNKIIAIGRLTAQPELTQTPNGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHHVTEILGQSFQLLESRAQRAMRENNANDNLADVILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1036449 ACA346_RS09745 WP_289647110.1 1919315..1919710(-) (ssbA) [Streptococcus parasuis strain NX1]
ATGTATAATAAAATCATTGCAATCGGTCGCTTGACGGCCCAACCGGAACTGACTCAAACGCCAAATGGCAAAAATCTGAC
TCGTGTCACAATTGCTGTGAACCGCCGTTTCAAGACAGAAAATGGCGAACGTGAGGCAGATTTTCTCAATGTTATTTTCT
GGGGAAAACTGGCGGAAACACTTGTCTCCTATGGCAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACCATGTGACCGAAATCTTAGGTCAATCTTTCCAGCTACTCGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAATGCGAATGATAATTTGGCGGATGTGATTTTGGAAGAGGAAGAATTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae TIGR4

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374
  ssb Latilactobacillus sakei subsp. sakei 23K

42.478

86.26

0.366

Multiple sequence alignment