Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACA109_RS06915 Genome accession   NZ_CP166872
Coordinates   1349423..1349848 (-) Length   141 a.a.
NCBI ID   WP_000934794.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 24EBSta0529     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1344423..1354848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA109_RS06870 (ACA109_06870) - 1344739..1344924 (-) 186 WP_001187244.1 DUF3113 family protein -
  ACA109_RS06875 (ACA109_06875) - 1344929..1345333 (-) 405 WP_000049795.1 DUF1064 domain-containing protein -
  ACA109_RS06880 (ACA109_06880) - 1345343..1345564 (-) 222 WP_001123695.1 DUF3269 family protein -
  ACA109_RS06885 (ACA109_06885) - 1345577..1345735 (-) 159 WP_000256589.1 hypothetical protein -
  ACA109_RS06890 (ACA109_06890) - 1345729..1346508 (-) 780 WP_000803062.1 ATP-binding protein -
  ACA109_RS06895 (ACA109_06895) - 1346518..1347288 (-) 771 WP_000190254.1 conserved phage C-terminal domain-containing protein -
  ACA109_RS06900 (ACA109_06900) - 1347353..1348108 (+) 756 WP_015967234.1 hypothetical protein -
  ACA109_RS06905 (ACA109_06905) - 1348186..1348860 (-) 675 WP_371257301.1 putative HNHc nuclease -
  ACA109_RS06910 (ACA109_06910) - 1348861..1349412 (-) 552 WP_001004505.1 NUMOD4 domain-containing protein -
  ACA109_RS06915 (ACA109_06915) ssbA 1349423..1349848 (-) 426 WP_000934794.1 single-stranded DNA-binding protein Machinery gene
  ACA109_RS06920 (ACA109_06920) - 1349848..1350486 (-) 639 WP_001043061.1 ERF family protein -
  ACA109_RS06925 (ACA109_06925) - 1350486..1350965 (-) 480 WP_000002513.1 siphovirus Gp157 family protein -
  ACA109_RS06930 (ACA109_06930) - 1350958..1351194 (-) 237 WP_000802315.1 hypothetical protein -
  ACA109_RS06935 (ACA109_06935) - 1351202..1351462 (-) 261 WP_000291075.1 DUF1108 family protein -
  ACA109_RS06940 (ACA109_06940) - 1351554..1351715 (-) 162 WP_000048121.1 DUF1270 family protein -
  ACA109_RS06945 (ACA109_06945) - 1351817..1352530 (-) 714 WP_001157023.1 phage repressor protein -
  ACA109_RS06950 (ACA109_06950) - 1352587..1352796 (+) 210 WP_000772137.1 hypothetical protein -
  ACA109_RS06955 (ACA109_06955) - 1352789..1352929 (-) 141 WP_000939495.1 hypothetical protein -
  ACA109_RS06960 (ACA109_06960) - 1352944..1353387 (-) 444 WP_000435361.1 hypothetical protein -
  ACA109_RS06965 (ACA109_06965) - 1353400..1353648 (-) 249 WP_000272856.1 helix-turn-helix domain-containing protein -
  ACA109_RS06970 (ACA109_06970) - 1353812..1354135 (+) 324 WP_001260487.1 helix-turn-helix domain-containing protein -
  ACA109_RS06975 (ACA109_06975) - 1354148..1354609 (+) 462 WP_000525009.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15837.35 Da        Isoelectric Point: 4.8659

>NTDB_id=1035845 ACA109_RS06915 WP_000934794.1 1349423..1349848(-) (ssbA) [Staphylococcus aureus strain 24EBSta0529]
MLNRVVLVGRLTKDPEFRTTPNGVSVATFTLAVNRTFTNAQGEREADFINCVTFRKQADNVNNYLSKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNNNQQPNNNYQQQGQTQSGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1035845 ACA109_RS06915 WP_000934794.1 1349423..1349848(-) (ssbA) [Staphylococcus aureus strain 24EBSta0529]
ATGTTAAACAGAGTAGTTTTAGTAGGACGCTTAACAAAAGACCCAGAATTCAGAACAACGCCAAACGGTGTAAGTGTAGC
TACTTTCACTCTTGCAGTCAATAGAACATTCACAAACGCACAAGGAGAACGTGAGGCAGATTTTATTAATTGTGTAACTT
TTAGAAAACAAGCAGATAACGTGAATAACTATTTATCAAAAGGATCATTAGCTGGTGTTGACGGTCGCCTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTGTATTCGTTACCGAAGTTGTATGTGACAGTGTCCAATTCCTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTACCAACAACAAGGACAAACACAATCTGGCAATAACCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

82.243

75.887

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

75.177

0.454
  ssbA Streptococcus mutans UA159

41.844

100

0.418
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.716

100

0.397
  ssbB/cilA Streptococcus mitis NCTC 12261

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae Rx1

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae D39

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae R6

43.22

83.688

0.362
  ssbB/cilA Streptococcus mitis SK321

43.22

83.688

0.362

Multiple sequence alignment