Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QUE89_RS11935 Genome accession   NZ_AP028070
Coordinates   2598847..2600070 (+) Length   407 a.a.
NCBI ID   WP_286220301.1    Uniprot ID   -
Organism   Marinobacter sp. LA51     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2593847..2605070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE89_RS11915 - 2594095..2594670 (-) 576 WP_286220297.1 pilin -
  QUE89_RS11920 - 2594594..2596123 (-) 1530 WP_286220298.1 O-antigen ligase family protein -
  QUE89_RS11925 - 2596236..2596739 (-) 504 WP_286220299.1 pilin -
  QUE89_RS11930 pilB 2597132..2598844 (+) 1713 WP_286220300.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QUE89_RS11935 pilC 2598847..2600070 (+) 1224 WP_286220301.1 type II secretion system F family protein Machinery gene
  QUE89_RS11940 pilD 2600138..2601013 (+) 876 WP_286220302.1 A24 family peptidase Machinery gene
  QUE89_RS11945 coaE 2601017..2601616 (+) 600 WP_286220303.1 dephospho-CoA kinase -
  QUE89_RS11950 - 2601609..2602706 (+) 1098 WP_286220304.1 hypothetical protein -
  QUE89_RS11955 tsaA 2602709..2603452 (+) 744 WP_286220305.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44571.49 Da        Isoelectric Point: 9.4657

>NTDB_id=103569 QUE89_RS11935 WP_286220301.1 2598847..2600070(+) (pilC) [Marinobacter sp. LA51]
MAEKAQKLESYVWEGKDRKGNKSKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGGSKKISPFDIAMLTRQLATMM
KAGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTSFAGALSKHPKHFDDLYCNLVDSGEKAGALEQMLDRIATYLEK
TELLKKKVKKAMTYPIAVVVVAIIVTAILLVKVVPQFESLFKGFGAELPVFTQFVVRLSEWMQTWWFVVLLGIVGTIFLF
KEAVRRSQKFSDFIDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIMRIKNDVSSG
TQLQASMRQQDIFPVMAVQLTAIGEESGNLDEMLQKVAEHYEAVVDDMVDNLTALMEPMIMSVLGVLVGGLIIAMYLPIF
QMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=103569 QUE89_RS11935 WP_286220301.1 2598847..2600070(+) (pilC) [Marinobacter sp. LA51]
ATGGCAGAGAAAGCGCAAAAGCTGGAATCGTACGTTTGGGAAGGCAAGGACCGCAAAGGCAACAAGTCCAAGGGAGAGCT
GACCGGTTCGAACCTGGCCTTGGTAAAGGCCCAGCTTCGCAAACAGGGCATCATTCCAGACAAGGTCAAAAAGAAGCCCA
AGCCACTGTTTGGTGGTGGCAGCAAAAAAATATCGCCTTTCGACATTGCGATGCTGACCCGACAGCTCGCGACCATGATG
AAAGCGGGCGTGCCGCTGGTGCAGAGCTTTGACATCGTTGCCGACGGTCTTGAAAACAAGGGCTTGCAAGAACTGGTGAT
GAGCATTCGCAATGACATCTCATCAGGAACCAGTTTCGCCGGTGCGCTTAGCAAGCACCCAAAACATTTTGATGATCTTT
ACTGCAACCTGGTTGATTCCGGCGAAAAAGCCGGTGCACTGGAACAGATGCTGGACCGGATCGCCACCTACCTTGAAAAG
ACTGAACTGCTGAAGAAGAAAGTTAAAAAGGCAATGACCTATCCTATTGCGGTCGTTGTTGTAGCCATCATTGTGACCGC
GATTCTTCTCGTGAAGGTAGTCCCTCAATTTGAAAGCCTGTTCAAGGGCTTTGGTGCCGAGCTTCCGGTCTTTACTCAGT
TTGTCGTCCGATTATCGGAATGGATGCAAACCTGGTGGTTTGTCGTGTTACTCGGGATTGTCGGCACCATTTTCTTATTT
AAGGAAGCCGTACGCAGGTCCCAGAAGTTCTCTGACTTTATCGACAAGTACGTTTTAAAATTGCCGGTTGTCGGTGAAAT
TCTTGATAAGTCTGCCGTTGCCAAGTTCGGCCGTGTACTGTCGACAACCTTCGCAGCCGGCGTTCCTCTCGTCGACGCGC
TTGATTCCGTTGCTGGAGCGACAGGTAACGCCGTGTACCGGGACGCCATCATGCGAATAAAAAACGATGTCTCCAGCGGT
ACACAGCTCCAGGCTTCCATGCGCCAGCAGGATATCTTTCCGGTTATGGCGGTGCAGCTCACGGCCATTGGTGAAGAATC
CGGTAATCTGGATGAGATGCTTCAGAAGGTTGCTGAGCACTACGAGGCCGTTGTTGATGACATGGTCGATAACCTGACTG
CTCTCATGGAACCCATGATCATGTCGGTTCTGGGTGTTCTCGTTGGCGGCCTCATCATCGCCATGTACCTCCCCATCTTC
CAGATGGGCCAGGTCGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-398)

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.995

99.754

0.668
  pilC Acinetobacter baumannii D1279779

57.778

99.509

0.575
  pilC Acinetobacter baylyi ADP1

57.635

99.754

0.575
  pilC Legionella pneumophila strain ERS1305867

52.956

99.754

0.528
  pilG Neisseria gonorrhoeae MS11

42.506

100

0.425
  pilG Neisseria meningitidis 44/76-A

42.26

100

0.423
  pilC Vibrio cholerae strain A1552

40.64

99.754

0.405
  pilC Vibrio campbellii strain DS40M4

39.803

100

0.398
  pilC Thermus thermophilus HB27

36.973

99.017

0.366

Multiple sequence alignment