Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QUE89_RS11940 Genome accession   NZ_AP028070
Coordinates   2600138..2601013 (+) Length   291 a.a.
NCBI ID   WP_286220302.1    Uniprot ID   -
Organism   Marinobacter sp. LA51     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2595138..2606013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE89_RS11925 - 2596236..2596739 (-) 504 WP_286220299.1 pilin -
  QUE89_RS11930 pilB 2597132..2598844 (+) 1713 WP_286220300.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QUE89_RS11935 pilC 2598847..2600070 (+) 1224 WP_286220301.1 type II secretion system F family protein Machinery gene
  QUE89_RS11940 pilD 2600138..2601013 (+) 876 WP_286220302.1 A24 family peptidase Machinery gene
  QUE89_RS11945 coaE 2601017..2601616 (+) 600 WP_286220303.1 dephospho-CoA kinase -
  QUE89_RS11950 - 2601609..2602706 (+) 1098 WP_286220304.1 hypothetical protein -
  QUE89_RS11955 tsaA 2602709..2603452 (+) 744 WP_286220305.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  QUE89_RS11960 - 2603610..2605847 (+) 2238 WP_286222879.1 response regulator -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32215.38 Da        Isoelectric Point: 6.4625

>NTDB_id=103570 QUE89_RS11940 WP_286220302.1 2600138..2601013(+) (pilD) [Marinobacter sp. LA51]
MLTLDTLLATPWLLFLSVTLLSLCIGSFLNVVILRLPKMMHQDWRCQCEEFLELPENQRKPEEQITLSKPASTCPSCGHT
IRAWENIPVVSYLVLGGKCASCKTGISPRYPIIEAITALLSIVTIALLGPTEATLWSLLLVWSLVALTVIDFDTQLLPDS
ITLPLLWLGLVLNYFGVLTDFTSAFWGAVWGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSV
VGAVVGISLMIFKKHGREVPIPFGPYLAAAGLLCLWFGTEIQRFWFGFLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=103570 QUE89_RS11940 WP_286220302.1 2600138..2601013(+) (pilD) [Marinobacter sp. LA51]
ATGCTCACACTAGACACACTTCTGGCGACGCCCTGGCTTTTGTTCCTGTCCGTCACCCTGCTATCCCTCTGCATCGGCAG
CTTTCTCAACGTAGTCATCCTGCGCCTGCCCAAGATGATGCATCAGGACTGGCGCTGCCAATGCGAGGAATTCCTGGAAC
TGCCTGAAAACCAGAGAAAGCCGGAAGAGCAGATCACCCTGTCCAAACCGGCATCGACCTGCCCTTCCTGTGGCCACACT
ATTCGAGCCTGGGAAAACATTCCGGTGGTCAGTTACCTGGTACTTGGCGGCAAGTGCGCCTCCTGCAAGACGGGTATTTC
ACCCCGCTACCCGATCATCGAAGCAATCACCGCCCTGCTCTCCATTGTGACCATTGCACTGCTTGGCCCCACCGAGGCCA
CGCTTTGGTCGTTGTTGCTAGTATGGTCTCTGGTAGCTTTGACGGTGATCGATTTCGACACCCAACTGTTACCGGACAGC
ATTACCTTGCCCCTGCTCTGGCTCGGCCTGGTCCTGAATTACTTTGGCGTGCTGACCGACTTCACCAGCGCTTTCTGGGG
CGCAGTCTGGGGCTACCTGTCCCTGTGGTCAGTGTACTGGCTGTTCAAACTGGTCACTGGCAAGGAAGGCATGGGGCATG
GTGACTTCAAACTACTGGCCGCACTAGGCGCGTGGCTGGGCTGGCAGCTGCTGCCGGCGGTAATCCTGCTGTCTTCCGTG
GTTGGTGCGGTGGTGGGCATCAGCCTGATGATTTTCAAGAAGCATGGCCGCGAGGTACCAATTCCTTTCGGGCCCTACCT
GGCGGCTGCGGGCCTACTGTGCCTCTGGTTTGGAACCGAGATCCAGCGTTTCTGGTTTGGCTTTCTGGGTGTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

54.015

94.158

0.509
  pilD Acinetobacter nosocomialis M2

53.65

94.158

0.505
  pilD Vibrio cholerae strain A1552

51.799

95.533

0.495
  pilD Vibrio campbellii strain DS40M4

49.825

97.938

0.488
  pilD Neisseria gonorrhoeae MS11

50.593

86.942

0.44

Multiple sequence alignment