Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OAM_RS00990 Genome accession   NZ_CP166824
Coordinates   207431..208543 (+) Length   370 a.a.
NCBI ID   WP_010433340.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus ZF14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 202431..213543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAM_RS00970 (OAM_000970) rsmB 203286..204566 (-) 1281 WP_010433330.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OAM_RS00975 (OAM_000975) fmt 204686..205651 (-) 966 WP_010433333.1 methionyl-tRNA formyltransferase -
  OAM_RS00980 (OAM_000980) def 205690..206202 (-) 513 WP_010433336.1 peptide deformylase -
  OAM_RS00985 (OAM_000985) - 206343..207434 (+) 1092 WP_010433338.1 LysM peptidoglycan-binding domain-containing protein -
  OAM_RS00990 (OAM_000990) dprA 207431..208543 (+) 1113 WP_010433340.1 DNA-processing protein DprA Machinery gene
  OAM_RS00995 (OAM_000995) - 208547..209023 (+) 477 WP_009848094.1 DUF494 family protein -
  OAM_RS01000 (OAM_001000) - 209036..209605 (+) 570 WP_010433345.1 type I DNA topoisomerase -
  OAM_RS01005 (OAM_001005) - 209674..210804 (-) 1131 WP_010433347.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OAM_RS01010 (OAM_001010) purE 210810..211295 (-) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OAM_RS01015 (OAM_001015) - 211491..212048 (+) 558 WP_010433350.1 L-threonylcarbamoyladenylate synthase -
  OAM_RS01020 (OAM_001020) hemF 212068..212985 (+) 918 WP_016767527.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40067.90 Da        Isoelectric Point: 6.8755

>NTDB_id=1035427 OAM_RS00990 WP_010433340.1 207431..208543(+) (dprA) [Vibrio cyclitrophicus ZF14]
MNEQPLIAWLSLSFVPQLGGKRLSRLLSIDSPSNIVGYSSQQLQALGLSAKQIAYLREQAPREVEACLAWQARQPNHHIL
TPNCPHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPVRHRNLADRICENGALISEFRPDAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPCLFEPTSSIGENEQLPFPQLF
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1035427 OAM_RS00990 WP_010433340.1 207431..208543(+) (dprA) [Vibrio cyclitrophicus ZF14]
GTGAATGAGCAACCACTGATCGCTTGGCTCTCTCTGAGCTTTGTTCCGCAATTGGGTGGCAAGCGACTTTCTCGATTGCT
GAGCATTGATTCCCCTTCGAATATTGTTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTCTGTCTGCCAAGCAAATTG
CTTATTTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCTTAGCGTGGCAAGCAAGACAACCCAACCATCACATCCTT
ACCCCGAATTGCCCTCATTACCCCAAACTGCTGAATGAGACCGCCTCTGCGCCAAGTGTGCTTTTTGTTAAAGGTCATGT
TGAAAAATTGATTGAGCCTCAAATCGCGATGGTCGGCAGTCGCAATGCTAGTCTCGAAGGGTTGCAAACCGCGAAGTCTT
TCGCCAAAGAGTTCGTTCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATCGATGGCTATGCTCATGATGGT
GCTCTAGATAAGGGTGGGGAAACTTTTGCTGTGTTGGGTTCGGGTTTGGATTCTATTTATCCTGTCCGACACCGAAATTT
AGCGGATAGAATTTGTGAGAATGGTGCGTTGATTTCAGAGTTCCGTCCAGATGCCAAACCACGACCTGAACATTTTCCTC
GTCGTAACCGTATTATAAGTGGTTTATCGCTCGGAACCTTAGTGGTTGAAGCAGCTGAGAAAAGTGGCTCTTTGATTACG
GCTCGCTATGCCATGGAGCAGGGGCGCGAGGTTTTCGCGCTTCCAGGTTCTATTCATAGCCCAACCAGTCGTGGAGGGAA
TAGTTTAATCAAAGCTGGTGCATGTTTGGTACAGAGTGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATTGATCAGCAGCCCTGTTTGTTCGAACCTACGTCCAGTATTGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTC
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.293

99.73

0.681
  dprA Vibrio cholerae strain A1552

58.491

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.47
  dprA Legionella pneumophila strain ERS1305867

44.262

98.919

0.438
  dprA Neisseria meningitidis MC58

38.539

100

0.414
  dprA Neisseria meningitidis strain C311

38.539

100

0.414
  dprA Haemophilus influenzae Rd KW20

44.311

90.27

0.4
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.395
  dprA Neisseria gonorrhoeae strain FA1090

36.962

100

0.395
  dprA Acinetobacter baumannii strain A118

42.249

88.919

0.376
  dprA Acinetobacter baumannii D1279779

41.411

88.108

0.365

Multiple sequence alignment