Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QUF19_RS15630 Genome accession   NZ_AP028067
Coordinates   3473988..3475682 (-) Length   564 a.a.
NCBI ID   WP_286294856.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3468988..3480682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS15610 - 3469665..3470513 (-) 849 WP_102438491.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  QUF19_RS15615 - 3470583..3472100 (-) 1518 WP_286294855.1 AAA family ATPase -
  QUF19_RS15620 aroB 3472180..3473268 (-) 1089 WP_017104650.1 3-dehydroquinate synthase -
  QUF19_RS15625 aroK 3473293..3473811 (-) 519 WP_004729664.1 shikimate kinase AroK -
  QUF19_RS15630 pilQ 3473988..3475682 (-) 1695 WP_286294856.1 type IV pilus secretin PilQ family protein Machinery gene
  QUF19_RS15635 pilP 3475742..3476260 (-) 519 WP_286298909.1 pilus assembly protein PilP Machinery gene
  QUF19_RS15640 pilO 3476247..3476858 (-) 612 WP_286294857.1 type 4a pilus biogenesis protein PilO Machinery gene
  QUF19_RS15645 pilN 3476851..3477465 (-) 615 WP_286294858.1 PilN domain-containing protein Machinery gene
  QUF19_RS15650 pilM 3477449..3478474 (-) 1026 WP_286294859.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 61439.00 Da        Isoelectric Point: 4.3783

>NTDB_id=103533 QUF19_RS15630 WP_286294856.1 3473988..3475682(-) (pilQ) [Vibrio sp. FE10]
MNKGLQGALLSMMLFFSVMNYAETSPNNLDNIDFRVNKNKDAVIIIELATSTAVVDVQRVQEGLSIELLNTKVDDDKLYL
LDVKDFATLVEGVEVFRETPSTRLLATITDDYQYEYNLKGRFIEVIVSKPLVKESAAEKSVLEKEGKLISINFQDIPVRN
VLQLIADYNDFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELG
ELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQIEARIVTV
TEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQIAPYDDNGGDSAIDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDL
ELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRP
GQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPK
VVIQ

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=103533 QUF19_RS15630 WP_286294856.1 3473988..3475682(-) (pilQ) [Vibrio sp. FE10]
ATGAACAAAGGGCTACAGGGTGCACTGCTGTCTATGATGTTGTTTTTTAGCGTGATGAATTACGCAGAGACATCCCCCAA
TAATTTGGACAACATCGATTTCAGGGTCAACAAGAACAAAGATGCGGTCATCATTATTGAATTGGCAACCAGCACTGCGG
TGGTCGATGTTCAAAGAGTTCAAGAAGGGCTGAGCATTGAACTGCTCAATACTAAGGTTGATGACGACAAGCTCTATCTG
TTGGATGTAAAAGACTTTGCCACCTTAGTTGAAGGGGTTGAGGTCTTCAGAGAAACGCCGAGTACCCGACTGTTAGCCAC
GATCACCGATGATTACCAATACGAGTACAACCTAAAAGGTCGCTTTATCGAAGTCATCGTGAGTAAACCGCTGGTTAAAG
AGAGCGCCGCTGAGAAGAGTGTGTTGGAGAAAGAGGGCAAACTCATCTCAATTAACTTCCAAGACATTCCTGTTCGTAAT
GTTCTTCAGCTTATTGCCGATTATAACGATTTCAACCTCGTGGTGTCTGACTCGGTTTCAGGGAACCTCACTTTGCGGTT
AGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGCTTGGATAAGCGCGTTGATGGCAATGTCA
TCTTGGTTGCGCCAAAAGCTGAACTTGACCTTCGAGAGCAGCAAGCCTTAGAAAAATCTCGTTTGGAAGAAGAGTTGGGC
GAGCTTAAATCGGAAATCATCAAGATTAACTTTGCTAAAGCGACCGACATCGCCGATATGATTGGTGGGGAAGGGGCGGT
GAGTATGCTGTCTGACCGCGGCTCGATTACCATTGATGAGAGAACTAACTCACTGCTCATTCGTGAATTGGAAGAAAACA
TTGCGGTGATACGAGGCATCATTGAATCGCTAGATATTCCCGTGAAGCAAGTACAGATAGAGGCGCGTATTGTCACTGTG
ACCGAGGGTAACCTTGATGAGTTAGGGGTGCGCTGGGGTGTTTCTTCGACCAACGGAAGCTTCAAAGTTGGCGGCTCAAT
AGAAGGTAACCATCCATCACAAATTGCGCCGTATGACGATAATGGTGGGGATAGTGCGATTGACGATTACCTCAACGTTA
ATCTAGGGGCGACATCGCCTAATGCATCAAGCATTGCGTTTCAGGTGGCTAAGCTGGGTTCAGATACCTTGCTTGATCTT
GAATTGTCGGCACTGCAACAAGAATCAAAAGCTGAGATTATTTCTAGCCCACGCTTAATCACCACCAATAAAAAGCCCGC
TTACATTGAGCAAGGTACTGAAATCCCTTACTTAGAATCCTCTTCCAGTGGTGCAACTTCGGTCGCATTTAAAAAAGCGG
TCTTGAGTCTTAAGGTCACACCGCAGATAACCCCTGATAATCGTCTGGTATTAGATTTGAGTGTCACTCAGGACAGACCG
GGGCAGGTTGTGAAAACAGGAACCGGTGAGGCTGTGGCAATCGATACTCAAAGGATTGGGACGCAAGTGCTTGTTAATAA
TGGTGAAACGGTTGTTCTTGGTGGGATATTTCAACACAGTGTTAGCAGCACAGTCGACAAAGTTCCTCTGCTAGGAGACC
TGCCAGTTTTGGGGGCATTGTTCCGTCGCAGCTATGAAAATGTGGGTAAAAGTGAACTACTTATTTTTGTTACACCTAAA
GTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(171-219)

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)

Bacterial type II and III secretion system protein (Secretin)

(404-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

81.022

97.163

0.787
  pilQ Vibrio cholerae strain A1552

79.174

98.759

0.782
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

79.174

98.759

0.782
  pilQ Legionella pneumophila strain ERS1305867

42.446

98.582

0.418
  pilQ Legionella pneumophila strain Lp02

42.446

98.582

0.418
  pilQ Pseudomonas aeruginosa PAK

41.113

98.759

0.406
  comQ Acinetobacter baylyi ADP1

39.362

100

0.394
  pilQ Acinetobacter baumannii strain A118

37

100

0.394
  pilQ Acinetobacter baumannii D1279779

37

100

0.394

Multiple sequence alignment