Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QUF19_RS15650 Genome accession   NZ_AP028067
Coordinates   3477449..3478474 (-) Length   341 a.a.
NCBI ID   WP_286294859.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3472449..3483474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS15625 aroK 3473293..3473811 (-) 519 WP_004729664.1 shikimate kinase AroK -
  QUF19_RS15630 pilQ 3473988..3475682 (-) 1695 WP_286294856.1 type IV pilus secretin PilQ family protein Machinery gene
  QUF19_RS15635 pilP 3475742..3476260 (-) 519 WP_286298909.1 pilus assembly protein PilP Machinery gene
  QUF19_RS15640 pilO 3476247..3476858 (-) 612 WP_286294857.1 type 4a pilus biogenesis protein PilO Machinery gene
  QUF19_RS15645 pilN 3476851..3477465 (-) 615 WP_286294858.1 PilN domain-containing protein Machinery gene
  QUF19_RS15650 pilM 3477449..3478474 (-) 1026 WP_286294859.1 type IV pilus assembly protein PilM Machinery gene
  QUF19_RS15655 - 3478626..3481184 (+) 2559 WP_286294860.1 PBP1A family penicillin-binding protein -
  QUF19_RS15660 oxyR 3481297..3482190 (-) 894 WP_017108572.1 DNA-binding transcriptional regulator OxyR -
  QUF19_RS15665 - 3482395..3483123 (+) 729 WP_017073712.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 38232.79 Da        Isoelectric Point: 6.7738

>NTDB_id=103537 QUF19_RS15650 WP_286294859.1 3477449..3478474(-) (pilM) [Vibrio sp. FE10]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGCRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVESRADALNKAGFKP
VVVDTQAHGLLNIWQLASRLYPEKKNWLLVDIGIDQTSLGIIPQDSAPFYKDIAFGTQDLRAADNPSDIEGVFGTAEDTH
RFIVNLIEKLKRQLQLYSSVNALQPISGIWLMGEGASTPMLTEELQRHFQLSCESLNPLSLFENKVAKKRRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=103537 QUF19_RS15650 WP_286294859.1 3477449..3478474(-) (pilM) [Vibrio sp. FE10]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCTGTGGTCCTAAAACCCGTTGGGGAGTT
GTATGCCTTAGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTCTGGAGTATCAGAAAA
CTGTTAAGAAACTCAAAGAACTTAGGAAAGGACTGCCTTTTGGCTGCCGCAACGTCGCCATTTCGGTACCTGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGTGAATTAGAAGACAGAGAAAAAGAGTTTTCGATCTATCAAACCTTTGCTCA
CCAATCTCCCTTTCCTATTGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGATCGACAA
GCAGTTATCAGGTGTACGCCACTCGCAAAGAGGTGGTGGAGAGTCGGGCGGATGCTTTAAATAAAGCCGGCTTTAAACCT
GTCGTCGTCGACACTCAAGCGCACGGCCTGCTCAATATTTGGCAGCTAGCTTCTCGACTGTACCCAGAAAAAAAGAATTG
GCTATTGGTCGATATCGGAATCGACCAAACCTCGCTCGGGATTATCCCGCAGGATTCGGCACCCTTCTATAAAGACATCG
CCTTTGGTACTCAAGATCTTCGCGCTGCTGATAACCCAAGTGATATAGAGGGCGTGTTCGGCACGGCTGAAGATACACAT
CGGTTTATTGTTAATTTGATCGAAAAGCTCAAGCGTCAGTTACAACTTTATTCTTCGGTGAATGCACTTCAGCCGATATC
CGGGATCTGGTTGATGGGCGAAGGAGCCAGCACGCCAATGCTGACGGAAGAGTTACAAAGACATTTTCAGTTAAGTTGTG
AATCGCTGAATCCTTTGTCGTTGTTTGAAAATAAGGTCGCGAAGAAACGTCGTTTACCCATGGACTGGCAACACTTTGGC
ATTGCGGCTGGTATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(242-328)

Type IV pilus assembly protein PilM; (PilM_2)

(8-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

54.839

100

0.548
  pilM Vibrio campbellii strain DS40M4

49.709

100

0.501

Multiple sequence alignment