Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QUF19_RS15645 Genome accession   NZ_AP028067
Coordinates   3476851..3477465 (-) Length   204 a.a.
NCBI ID   WP_286294858.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3471851..3482465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS15620 aroB 3472180..3473268 (-) 1089 WP_017104650.1 3-dehydroquinate synthase -
  QUF19_RS15625 aroK 3473293..3473811 (-) 519 WP_004729664.1 shikimate kinase AroK -
  QUF19_RS15630 pilQ 3473988..3475682 (-) 1695 WP_286294856.1 type IV pilus secretin PilQ family protein Machinery gene
  QUF19_RS15635 pilP 3475742..3476260 (-) 519 WP_286298909.1 pilus assembly protein PilP Machinery gene
  QUF19_RS15640 pilO 3476247..3476858 (-) 612 WP_286294857.1 type 4a pilus biogenesis protein PilO Machinery gene
  QUF19_RS15645 pilN 3476851..3477465 (-) 615 WP_286294858.1 PilN domain-containing protein Machinery gene
  QUF19_RS15650 pilM 3477449..3478474 (-) 1026 WP_286294859.1 type IV pilus assembly protein PilM Machinery gene
  QUF19_RS15655 - 3478626..3481184 (+) 2559 WP_286294860.1 PBP1A family penicillin-binding protein -
  QUF19_RS15660 oxyR 3481297..3482190 (-) 894 WP_017108572.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23390.81 Da        Isoelectric Point: 8.4961

>NTDB_id=103536 QUF19_RS15645 WP_286294858.1 3476851..3477465(-) (pilN) [Vibrio sp. FE10]
MLHQINLLPWRDEIRAQHKKRFIHLIVLGGILALAGQWAVGTYFHDQQDKQQARLTYLKQYIAQLDRQIQSLKVAEQEHK
AILTRLDVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSESLESVEMHSIV
HNRKRFNKEFQTFKVSFVFSPVSLDNTTAESTTAKIKDKGANHG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=103536 QUF19_RS15645 WP_286294858.1 3476851..3477465(-) (pilN) [Vibrio sp. FE10]
ATGTTGCATCAAATTAACCTGCTGCCTTGGCGTGATGAAATTCGAGCTCAGCATAAGAAGCGTTTTATCCATCTCATAGT
GCTCGGAGGAATCCTTGCGCTTGCAGGACAATGGGCCGTTGGCACTTATTTTCATGACCAACAAGACAAGCAGCAAGCTC
GCCTTACTTACCTAAAGCAATACATTGCCCAGCTCGACCGTCAAATCCAATCACTGAAAGTCGCGGAGCAAGAACATAAA
GCGATCCTGACTCGACTCGACGTCGTGGAATCCTTACAGCTTGGTCGTAACAAGACCACCGACTTTATGAACCTAATGCC
GGAGCTGATTCCTGAGGGCGTCTATGTCGACAAGATAAAGATGAATGGTCAGGAGATTGAAATGTCGGGCATCAGCGACA
GCACCGCTCGCCTTGCGACTATGTTGGATAACTTGGAGCGATCTGAGTCACTTGAAAGTGTCGAGATGCATTCTATTGTT
CATAACCGCAAGCGCTTCAATAAGGAGTTCCAGACCTTCAAGGTCTCTTTTGTGTTTAGTCCTGTTTCTTTAGACAACAC
AACCGCAGAGAGCACAACCGCGAAGATAAAAGACAAGGGGGCGAACCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

65.761

90.196

0.593
  pilN Vibrio cholerae strain A1552

64.13

90.196

0.578

Multiple sequence alignment