Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3094_RS16800 Genome accession   NZ_CP166448
Coordinates   3883303..3884361 (-) Length   352 a.a.
NCBI ID   WP_042773967.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria strain XTN47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3878303..3889361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3094_RS16780 (AB3094_16770) - 3879360..3881309 (-) 1950 WP_011348456.1 type IV pilus secretin PilQ -
  AB3094_RS16785 (AB3094_16775) - 3881329..3881862 (-) 534 WP_007974439.1 pilus assembly protein PilP -
  AB3094_RS16790 (AB3094_16780) - 3881859..3882524 (-) 666 WP_008575845.1 type 4a pilus biogenesis protein PilO -
  AB3094_RS16795 (AB3094_16785) - 3882521..3883303 (-) 783 WP_011348457.1 PilN domain-containing protein -
  AB3094_RS16800 (AB3094_16790) comM 3883303..3884361 (-) 1059 WP_042773967.1 pilus assembly protein PilM Machinery gene
  AB3094_RS16805 (AB3094_16795) - 3884479..3887001 (+) 2523 WP_109291056.1 penicillin-binding protein 1A -
  AB3094_RS16810 (AB3094_16800) - 3887310..3887960 (+) 651 WP_011348460.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37579.19 Da        Isoelectric Point: 4.3924

>NTDB_id=1034538 AB3094_RS16800 WP_042773967.1 3883303..3884361(-) (comM) [Xanthomonas euvesicatoria strain XTN47]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPSSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1034538 AB3094_RS16800 WP_042773967.1 3883303..3884361(-) (comM) [Xanthomonas euvesicatoria strain XTN47]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGGCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCT
GTCGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAGCA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGTTTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCGCTGGTTGCCAGCGAATTGCCGGT
GGCTGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGTGGCCTGCCGGAAAGTTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACTGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50.857

99.432

0.506
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment