Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3094_RS12985 Genome accession   NZ_CP166448
Coordinates   3034305..3035339 (-) Length   344 a.a.
NCBI ID   WP_008574635.1    Uniprot ID   A0A3Q9Q2C2
Organism   Xanthomonas euvesicatoria strain XTN47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3029305..3040339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3094_RS12965 (AB3094_12960) csrA 3030417..3030629 (-) 213 WP_003481884.1 carbon storage regulator CsrA -
  AB3094_RS12970 (AB3094_12965) alaS 3030769..3033417 (-) 2649 WP_031422302.1 alanine--tRNA ligase -
  AB3094_RS12975 (AB3094_12970) recX 3033519..3034007 (-) 489 WP_029819218.1 recombination regulator RecX -
  AB3094_RS12980 (AB3094_12975) - 3034024..3034287 (+) 264 WP_008574633.1 hypothetical protein -
  AB3094_RS12985 (AB3094_12980) recA 3034305..3035339 (-) 1035 WP_008574635.1 recombinase RecA Machinery gene
  AB3094_RS12990 (AB3094_12985) lexA 3035512..3036153 (-) 642 WP_008574637.1 transcriptional repressor LexA -
  AB3094_RS12995 (AB3094_12990) ubiB 3036242..3037918 (-) 1677 WP_008574639.1 2-polyprenylphenol 6-hydroxylase -
  AB3094_RS13000 (AB3094_12995) - 3038386..3038880 (-) 495 WP_008574640.1 CinA family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37175.68 Da        Isoelectric Point: 5.0698

>NTDB_id=1034536 AB3094_RS12985 WP_008574635.1 3034305..3035339(-) (recA) [Xanthomonas euvesicatoria strain XTN47]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQGKDNARTYLRDNPQVATRL
EAELREKFQPAEAPREAGDDEDKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1034536 AB3094_RS12985 WP_008574635.1 3034305..3035339(-) (recA) [Xanthomonas euvesicatoria strain XTN47]
ATGGACGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTCATGCG
CATGGGCGACCGCGTCATCGAGGCAGTCGAAGTCATCCCGACCGGCTCGTTGATGCTGGATATCGCCCTGGGGATCGGCG
GCCTGCCGAAGGGCCGCGTGGTCGAAATCTACGGCCCGGAATCCTCCGGCAAGACCACCTTGACCCTGCAAGCCATCGCC
CAGTGCCAGAAGAACGGCGGCACCGCTGCCTTCATCGACGCCGAGCACGCGCTGGACCCGATTTATGCGGCCAAGCTGGG
CGTCAACGTCGACGACCTGCTGCTGTCGCAGCCCGATACCGGTGAGCAGGCACTGGAAATTGCCGACATGCTGGTGCGCT
CGGGTTCGGTTGATATCGTGGTGGTCGACTCGGTTGCCGCACTGACGCCAAAGGCGGAAATCGAAGGCGAGATGGGCGAC
CAGTTGCCTGGTTTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAATATCAAGCGCTCCAACACGCT
GGTGGTCTTCATCAATCAGCTGCGCATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGCCGTATCGGTGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCGTGACCGAAATCCTGTATGGCGA
AGGCATCAGCCGCGAGGGCGAATTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGACAAGGCCGGCGCCTGGTACAGCT
ACGGCGATGAGCGCATCGGGCAGGGCAAGGACAACGCGCGGACCTACCTGCGCGACAACCCGCAGGTTGCGACCCGGCTG
GAAGCCGAGTTGCGTGAGAAGTTCCAGCCTGCCGAAGCACCGCGCGAGGCCGGCGACGACGAAGACAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9Q2C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.93

100

0.709
  recA Pseudomonas stutzeri DSM 10701

70.623

97.965

0.692
  recA Acinetobacter baumannii D1279779

72.256

95.349

0.689
  recA Ralstonia pseudosolanacearum GMI1000

75.08

90.988

0.683
  recA Vibrio cholerae strain A1552

70.859

94.767

0.672
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.859

94.767

0.672
  recA Neisseria gonorrhoeae MS11

69.325

94.767

0.657
  recA Neisseria gonorrhoeae MS11

69.325

94.767

0.657
  recA Neisseria gonorrhoeae strain FA1090

69.325

94.767

0.657
  recA Glaesserella parasuis strain SC1401

65.407

100

0.654
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

97.093

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.047

100

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

61.976

97.093

0.602
  recA Helicobacter pylori strain NCTC11637

61.747

96.512

0.596
  recA Helicobacter pylori 26695

61.446

96.512

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

62.462

94.477

0.59
  recA Streptococcus pneumoniae D39

61.585

95.349

0.587
  recA Streptococcus mitis SK321

61.585

95.349

0.587
  recA Streptococcus pneumoniae Rx1

61.585

95.349

0.587
  recA Streptococcus pneumoniae R6

61.585

95.349

0.587
  recA Streptococcus pneumoniae TIGR4

61.585

95.349

0.587
  recA Streptococcus pyogenes NZ131

60.909

95.93

0.584
  recA Streptococcus mitis NCTC 12261

61.28

95.349

0.584
  recA Streptococcus mutans UA159

60.606

95.93

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.788

95.93

0.564
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561

Multiple sequence alignment