Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   AB8810_RS07385 Genome accession   NZ_CP166096
Coordinates   1738302..1739432 (+) Length   376 a.a.
NCBI ID   WP_179566286.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1733302..1744432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8810_RS07360 (AB8810_07360) - 1733589..1734044 (-) 456 WP_191826570.1 DUF4426 domain-containing protein -
  AB8810_RS07365 (AB8810_07365) proC 1734057..1734890 (-) 834 WP_179566292.1 pyrroline-5-carboxylate reductase -
  AB8810_RS07370 (AB8810_07370) - 1735041..1736087 (-) 1047 WP_206229148.1 hypothetical protein -
  AB8810_RS07375 (AB8810_07375) - 1736366..1737052 (-) 687 WP_206229149.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB8810_RS07380 (AB8810_07380) pilT 1737141..1738178 (+) 1038 WP_104557606.1 type IV pilus twitching motility protein PilT Machinery gene
  AB8810_RS07385 (AB8810_07385) pilU 1738302..1739432 (+) 1131 WP_179566286.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AB8810_RS07390 (AB8810_07390) - 1739594..1740859 (+) 1266 WP_369915996.1 WD40 repeat domain-containing protein -
  AB8810_RS07395 (AB8810_07395) - 1740856..1742352 (+) 1497 WP_369915998.1 diguanylate cyclase domain-containing protein -
  AB8810_RS07400 (AB8810_07400) - 1742403..1743002 (+) 600 WP_372530419.1 MFS transporter permease -
  AB8810_RS07405 (AB8810_07405) - 1743174..1743848 (+) 675 WP_369916640.1 YitT family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41914.22 Da        Isoelectric Point: 6.8811

>NTDB_id=1033357 AB8810_RS07385 WP_179566286.1 1738302..1739432(+) (pilU) [Xanthomonas sp. NCPPB 3005]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKITPITQTPLTSQQSRDLVLNVMTPAQREEFEKTHECNFAIGVAG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAISFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRSQLLMDLSLNLRGVVAQQLIPTPDGKGRRVAMEIMLGTPLVQDYIREGEIHKLKDVMKESTNLGMKTF
DQSLFELYQAGEISYEDALRHADSQNEVRLRIKLAQGGDAKTLAQGMDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1033357 AB8810_RS07385 WP_179566286.1 1738302..1739432(+) (pilU) [Xanthomonas sp. NCPPB 3005]
ATGAGCACCATCGACTTCACCTCGTTCCTGAAACTGATGGCGCACCAGAAGGCGTCGGACCTGTTCATCACCTCGGGCAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCACCCCGATCACGCAGACGCCGCTGACCTCGCAGCAGAGCCGCGACCTGG
TGCTGAACGTGATGACCCCGGCGCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCAACTTCGCCATCGGCGTGGCCGGG
GTGGGGCGCTTCCGCGTCAGCTGCTTCTACCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGGATCGAGACGCGCATCCC
CACGGTCGATGAGCTGAACCTGCCGCCGGTGATCAAGACCCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAATCGACTTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGACCCGATCGAGTTCGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
TTGGGAGAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAAGGCA
TGGACCACGCCATCTCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACCCTGCATGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCCGAGGACCGCCGCAGCCAGCTGCTGATGGACCTGTCGCTGAACCTGCGCGGCGTGGT
CGCCCAGCAGTTGATCCCGACCCCCGACGGCAAGGGCCGGCGCGTGGCGATGGAGATCATGCTCGGCACCCCGCTGGTGC
AGGACTACATCCGCGAGGGCGAGATCCACAAGCTCAAGGACGTGATGAAGGAATCCACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCCACGCCGACTCGCAGAACGA
AGTGCGCCTGCGCATCAAGCTCGCCCAGGGTGGCGACGCCAAGACCCTGGCGCAGGGCATGGACGGGGTGGAGATCGCCG
AGGTGCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(117-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

65.854

98.138

0.646
  pilU Acinetobacter baylyi ADP1

63.585

94.947

0.604
  pilU Vibrio cholerae strain A1552

53.652

94.681

0.508
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.571

93.085

0.396
  pilT Pseudomonas aeruginosa PAK

41.003

90.16

0.37
  pilT Acinetobacter baumannii strain A118

40.407

91.489

0.37
  pilT Acinetobacter nosocomialis M2

40.407

91.489

0.37
  pilT Acinetobacter baumannii D1279779

40.407

91.489

0.37
  pilT Legionella pneumophila strain ERS1305867

40.597

89.096

0.362
  pilT Legionella pneumophila strain Lp02

40.597

89.096

0.362

Multiple sequence alignment