Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QUR23_RS07235 Genome accession   NZ_CP165636
Coordinates   1517298..1517726 (-) Length   142 a.a.
NCBI ID   WP_000934385.1    Uniprot ID   A0A2K0CLZ8
Organism   Staphylococcus aureus strain BSN11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1512298..1522726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUR23_RS07175 (QUR23_07170) - 1512539..1512781 (-) 243 WP_015984514.1 SAV1978 family virulence-associated passenger protein -
  QUR23_RS07180 (QUR23_07175) - 1512785..1513141 (-) 357 WP_000029376.1 SA1788 family PVL leukocidin-associated protein -
  QUR23_RS07185 (QUR23_07180) - 1513269..1513574 (-) 306 WP_000101252.1 hypothetical protein -
  QUR23_RS07190 (QUR23_07185) - 1513575..1513760 (-) 186 WP_001187243.1 DUF3113 family protein -
  QUR23_RS07195 (QUR23_07190) - 1513765..1514169 (-) 405 WP_000049794.1 DUF1064 domain-containing protein -
  QUR23_RS07200 (QUR23_07195) - 1514179..1514400 (-) 222 WP_015984512.1 DUF3269 family protein -
  QUR23_RS07205 (QUR23_07200) - 1514413..1514571 (-) 159 WP_000256589.1 hypothetical protein -
  QUR23_RS07210 (QUR23_07205) - 1514565..1515344 (-) 780 WP_000803062.1 ATP-binding protein -
  QUR23_RS07215 (QUR23_07210) - 1515354..1516124 (-) 771 WP_000190253.1 conserved phage C-terminal domain-containing protein -
  QUR23_RS07220 (QUR23_07215) - 1516190..1516471 (+) 282 WP_000414755.1 hypothetical protein -
  QUR23_RS07225 (QUR23_07220) - 1516464..1516613 (-) 150 WP_001081076.1 hypothetical protein -
  QUR23_RS07230 (QUR23_07225) - 1516610..1517284 (-) 675 WP_001124439.1 putative HNHc nuclease -
  QUR23_RS07235 (QUR23_07230) ssbA 1517298..1517726 (-) 429 WP_000934385.1 single-stranded DNA-binding protein Machinery gene
  QUR23_RS07240 (QUR23_07235) - 1517726..1518349 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  QUR23_RS07245 (QUR23_07240) - 1518342..1518563 (-) 222 WP_070002565.1 DUF2483 family protein -
  QUR23_RS07250 (QUR23_07245) - 1518573..1518833 (-) 261 WP_001556704.1 DUF1108 family protein -
  QUR23_RS07255 (QUR23_07250) - 1518838..1519155 (-) 318 WP_000829610.1 hypothetical protein -
  QUR23_RS07260 (QUR23_07255) - 1519245..1519406 (-) 162 WP_001285949.1 DUF1270 domain-containing protein -
  QUR23_RS07265 (QUR23_07260) - 1519418..1519681 (-) 264 WP_001124198.1 helix-turn-helix domain-containing protein -
  QUR23_RS07270 (QUR23_07265) - 1519740..1519967 (+) 228 WP_000801108.1 hypothetical protein -
  QUR23_RS07275 (QUR23_07270) - 1519969..1520160 (-) 192 WP_000389905.1 hypothetical protein -
  QUR23_RS07280 (QUR23_07275) - 1520210..1520566 (+) 357 WP_000768245.1 DUF2513 domain-containing protein -
  QUR23_RS07285 (QUR23_07280) - 1520561..1520755 (-) 195 WP_001148853.1 hypothetical protein -
  QUR23_RS07290 (QUR23_07285) - 1520771..1521568 (-) 798 WP_001148574.1 phage antirepressor Ant -
  QUR23_RS07295 (QUR23_07290) - 1521584..1521826 (-) 243 WP_000639925.1 DUF739 family protein -
  QUR23_RS07300 (QUR23_07295) - 1521990..1522706 (+) 717 WP_031880174.1 LexA family transcriptional regulator -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15872.58 Da        Isoelectric Point: 8.4825

>NTDB_id=1031096 QUR23_RS07235 WP_000934385.1 1517298..1517726(-) (ssbA) [Staphylococcus aureus strain BSN11]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1031096 QUR23_RS07235 WP_000934385.1 1517298..1517726(-) (ssbA) [Staphylococcus aureus strain BSN11]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.958

100

0.423
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

39.437

100

0.394
  ssbB/cilA Streptococcus mitis SK321

39.437

100

0.394

Multiple sequence alignment