Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AACH48_RS19385 Genome accession   NZ_AP027942
Coordinates   4234130..4235371 (+) Length   413 a.a.
NCBI ID   WP_010635960.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain VA84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4229130..4240371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH48_RS19360 (VAWG005_37400) ampD 4229518..4230090 (-) 573 WP_019840656.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AACH48_RS19365 (VAWG005_37410) - 4230214..4230684 (+) 471 WP_017779055.1 retropepsin-like aspartic protease -
  AACH48_RS19370 (VAWG005_37420) nadC 4230689..4231546 (+) 858 WP_201900013.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AACH48_RS19375 (VAWG005_37430) - 4231868..4232308 (+) 441 WP_010635961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AACH48_RS19380 (VAWG005_37440) pilB 4232299..4234014 (+) 1716 WP_201900045.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  AACH48_RS19385 (VAWG005_37450) pilC 4234130..4235371 (+) 1242 WP_010635960.1 type II secretion system F family protein Machinery gene
  AACH48_RS19390 (VAWG005_37460) pilD 4235394..4236266 (+) 873 WP_019839151.1 A24 family peptidase Machinery gene
  AACH48_RS19395 (VAWG005_37470) coaE 4236286..4236900 (+) 615 WP_019839152.1 dephospho-CoA kinase -
  AACH48_RS19400 (VAWG005_37480) zapD 4236938..4237660 (+) 723 WP_010635957.1 cell division protein ZapD -
  AACH48_RS19405 (VAWG005_37490) yacG 4237670..4237864 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  AACH48_RS19410 (VAWG005_37500) mutT 4237925..4238338 (-) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  AACH48_RS19415 (VAWG005_37510) - 4238347..4239525 (-) 1179 WP_019839153.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45468.58 Da        Isoelectric Point: 9.8834

>NTDB_id=103064 AACH48_RS19385 WP_010635960.1 4234130..4235371(+) (pilC) [Aeromonas dhakensis strain VA84]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGARIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=103064 AACH48_RS19385 WP_010635960.1 4234130..4235371(+) (pilC) [Aeromonas dhakensis strain VA84]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAAGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAGGATCAAGCCGATGGACATTGCCGTTGTCTCCCGC
CAGATCACCACCATGCTGTCGGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGCACTCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGACGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGTGCCCTGGAAACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTTTACCCCACCATGGTCATCCTGGT
CGCCATTGTCGTCACCTCCATTCTGCTGCTGTTCGTCATTCCGCAGTTTGAGGACATCTTCAAGAGCTTCGGCGCCGAAC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATATCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGTGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCTGGTGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

48.241

96.368

0.465
  pilC Vibrio campbellii strain DS40M4

47.607

96.126

0.458
  pilG Neisseria meningitidis 44/76-A

40.247

98.063

0.395
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment