Detailed information NTG0103065

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AACH48_RS19390
• Genome accession: NZ_AP027942
• Coordinates: 4235394..4236266 (+)
• Length: 290 a.a.
• NCBI ID: WP_019839151.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain VA84
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4230394..4241266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACH48_RS19370 (VAWG005_37420)	nadC	4230689..4231546 (+)	858	WP_201900013.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AACH48_RS19375 (VAWG005_37430)	-	4231868..4232308 (+)	441	WP_010635961.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AACH48_RS19380 (VAWG005_37440)	pilB	4232299..4234014 (+)	1716	WP_201900045.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
AACH48_RS19385 (VAWG005_37450)	pilC	4234130..4235371 (+)	1242	WP_010635960.1	type II secretion system F family protein	Machinery gene
AACH48_RS19390 (VAWG005_37460)	pilD	4235394..4236266 (+)	873	WP_019839151.1	A24 family peptidase	Machinery gene
AACH48_RS19395 (VAWG005_37470)	coaE	4236286..4236900 (+)	615	WP_019839152.1	dephospho-CoA kinase	-
AACH48_RS19400 (VAWG005_37480)	zapD	4236938..4237660 (+)	723	WP_010635957.1	cell division protein ZapD	-
AACH48_RS19405 (VAWG005_37490)	yacG	4237670..4237864 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
AACH48_RS19410 (VAWG005_37500)	mutT	4237925..4238338 (-)	414	WP_005305665.1	8-oxo-dGTP diphosphatase MutT	-
AACH48_RS19415 (VAWG005_37510)	-	4238347..4239525 (-)	1179	WP_019839153.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32499.82 Da
• Isoelectric Point: 6.7410

>NTDB_id=103065 AACH48_RS19390 WP_019839151.1 4235394..4236266(+) (pilD) [Aeromonas dhakensis strain VA84]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLAALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLFTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=103065 AACH48_RS19390 WP_019839151.1 4235394..4236266(+) (pilD) [Aeromonas dhakensis strain VA84]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAGGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGTTGACCGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTTCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGCGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGTTCACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGCTGCTGCTCTCCTCCCTG
GTAGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCACCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT
GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.888	98.621	0.61
pilD	Vibrio campbellii strain DS40M4	58.131	99.655	0.579
pilD	Acinetobacter baumannii D1279779	54.577	97.931	0.534
pilD	Acinetobacter nosocomialis M2	54.577	97.931	0.534
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459