Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PERCYII10_RS26750 Genome accession   NZ_LT673656
Coordinates   5693699..5694223 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa isolate PcyII-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5688699..5699223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PERCYII10_RS26735 aroB 5689815..5690921 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PERCYII10_RS26740 aroK 5690971..5691489 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PERCYII10_RS26745 pilQ 5691501..5693645 (-) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  PERCYII10_RS26750 comL/pilP 5693699..5694223 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PERCYII10_RS26755 pilO 5694220..5694843 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PERCYII10_RS26760 pilN 5694840..5695436 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PERCYII10_RS26765 pilM 5695436..5696500 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PERCYII10_RS26770 - 5696685..5699153 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=1030596 PERCYII10_RS26750 WP_003095836.1 5693699..5694223(-) (comL/pilP) [Pseudomonas aeruginosa isolate PcyII-10]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1030596 PERCYII10_RS26750 WP_003095836.1 5693699..5694223(-) (comL/pilP) [Pseudomonas aeruginosa isolate PcyII-10]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment