Detailed information    

insolico Bioinformatically predicted

Overview


Name   comE/blpR   Type   Regulator
Locus tag   AB4X21_RS01290 Genome accession   NZ_CP163380
Coordinates   227864..228598 (+) Length   244 a.a.
NCBI ID   WP_369088044.1    Uniprot ID   -
Organism   Streptococcus sp. CP1998     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 222864..233598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS01270 (AB4X21_01270) - 223649..224503 (+) 855 WP_369088355.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  AB4X21_RS01275 (AB4X21_01275) - 224604..224897 (+) 294 WP_369088042.1 DUF202 domain-containing protein -
  AB4X21_RS01280 (AB4X21_01280) groES 225027..225308 (+) 282 WP_369088043.1 co-chaperone GroES -
  AB4X21_RS01285 (AB4X21_01285) groL 225330..226954 (+) 1625 Protein_217 chaperonin GroEL -
  AB4X21_RS01290 (AB4X21_01290) comE/blpR 227864..228598 (+) 735 WP_369088044.1 response regulator transcription factor Regulator
  AB4X21_RS01295 (AB4X21_01295) - 228630..229916 (+) 1287 WP_369088045.1 sensor histidine kinase -
  AB4X21_RS01300 (AB4X21_01300) - 230206..230886 (+) 681 WP_369088046.1 ABC transporter ATP-binding protein -
  AB4X21_RS01305 (AB4X21_01305) - 230883..231590 (+) 708 WP_369088047.1 ABC transporter -
  AB4X21_RS01310 (AB4X21_01310) - 231929..233074 (-) 1146 WP_369088048.1 low temperature requirement protein A -

Sequence


Protein


Download         Length: 244 a.a.        Molecular weight: 28229.49 Da        Isoelectric Point: 6.6114

>NTDB_id=1029405 AB4X21_RS01290 WP_369088044.1 227864..228598(+) (comE/blpR) [Streptococcus sp. CP1998]
MLKIFVLEDEWIQQSRIEAVLQDLIRQKSLQCKAPEVFGKSSQLLDAITERGAHHLFFLDIEIKGEEKKGLEIAKEIRKK
DPHATIVFVTTHSEFMPITFQYKVAALDFIDKTLSEEEFRERISSAIDYTLEQVGTTIAQDAFTFESAMARVQVPFNKIL
YVETSPTIHKVILHTQEERLEFYASIADIEKADPRLYRCHRSFVVNPQNITKIDKEAKKAFFENGDNCLISRTKYRGLLE
ALKK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1029405 AB4X21_RS01290 WP_369088044.1 227864..228598(+) (comE/blpR) [Streptococcus sp. CP1998]
TTGTTGAAGATTTTTGTGTTAGAAGATGAATGGATCCAACAATCGCGTATCGAAGCGGTCTTGCAGGATCTCATCCGTCA
AAAATCCCTGCAATGCAAAGCGCCAGAAGTGTTTGGAAAGTCAAGCCAGTTGCTGGATGCTATCACAGAGAGAGGCGCCC
ATCACCTGTTCTTTTTAGATATCGAGATTAAAGGTGAGGAGAAAAAGGGTCTAGAGATCGCAAAAGAGATTCGTAAGAAA
GATCCCCATGCGACCATTGTCTTTGTCACTACTCACTCTGAATTCATGCCCATTACCTTTCAGTACAAAGTGGCCGCCTT
GGATTTTATCGATAAAACGCTGAGTGAGGAAGAGTTCAGAGAGAGAATCAGCTCAGCTATCGATTATACCTTGGAGCAAG
TTGGGACCACGATTGCGCAAGATGCCTTTACATTTGAGAGTGCGATGGCGCGTGTACAAGTTCCTTTTAATAAGATTTTG
TATGTTGAAACGTCTCCAACCATTCACAAGGTCATTTTACACACCCAGGAAGAGCGCTTGGAATTTTACGCTAGTATTGC
CGATATCGAAAAAGCAGATCCCCGCTTGTATCGGTGCCACCGCTCCTTTGTGGTGAATCCGCAAAATATTACGAAGATTG
ATAAAGAAGCCAAGAAAGCTTTTTTTGAAAATGGGGACAATTGCTTGATCTCACGGACCAAGTACAGAGGCTTACTGGAA
GCTTTGAAAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

55.23

97.951

0.541

  comE/comE1 Streptococcus equinus JB1

45.679

99.59

0.455

  comE/comE2 Streptococcus gordonii strain NCTC7865

39.837

100

0.402

  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

39.837

100

0.402

  comE/comE2 Streptococcus equinus JB1

38.057

100

0.385

  comE Streptococcus pneumoniae TIGR4

36

100

0.369

  comE Streptococcus mitis SK321

36

100

0.369

  comE Streptococcus mitis NCTC 12261

36

100

0.369

  comE Streptococcus infantis strain Atu-4

36

100

0.369

  comE Streptococcus pneumoniae Rx1

36

100

0.369

  comE Streptococcus pneumoniae D39

36

100

0.369

  comE Streptococcus pneumoniae R6

36

100

0.369


Multiple sequence alignment