Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NST54_RS18160 Genome accession   NZ_CP163264
Coordinates   3713233..3713589 (-) Length   118 a.a.
NCBI ID   WP_368985943.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-0152     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3708233..3718589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST54_RS18150 (NST54_18150) - 3709074..3712046 (+) 2973 WP_368985940.1 DEAD/DEAH box helicase -
  NST54_RS18155 (NST54_18155) - 3712651..3712815 (-) 165 WP_368985942.1 hypothetical protein -
  NST54_RS18160 (NST54_18160) ssbB 3713233..3713589 (-) 357 WP_368985943.1 single-stranded DNA-binding protein Machinery gene
  NST54_RS18165 (NST54_18165) - 3713889..3714323 (+) 435 WP_041846679.1 YwpF family protein -
  NST54_RS18170 (NST54_18170) - 3714370..3714750 (-) 381 WP_368985945.1 hypothetical protein -
  NST54_RS18175 (NST54_18175) fabZ 3714991..3715413 (-) 423 WP_368985947.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NST54_RS18180 (NST54_18180) - 3715474..3715779 (-) 306 WP_368985948.1 DNA-directed RNA polymerase subunit beta -
  NST54_RS18185 (NST54_18185) - 3715767..3715961 (-) 195 WP_368985950.1 hypothetical protein -
  NST54_RS18190 (NST54_18190) - 3716015..3716866 (-) 852 WP_368985951.1 flagellar hook-basal body protein -
  NST54_RS18195 (NST54_18195) - 3716997..3717821 (-) 825 WP_368985952.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13219.97 Da        Isoelectric Point: 9.0881

>NTDB_id=1029116 NST54_RS18160 WP_368985943.1 3713233..3713589(-) (ssbB) [Caldifermentibacillus hisashii strain FSL K6-0152]
MINQVTLVGRLTRDPELKLTQEGVALTNITLAVNRNYRSTSGSIETDFVQCTLWRRAAENTVQYCQKGSIIGIIGRIQTR
NYENSEGKRVYVTEVVADSVRFLRGRPAEDKEIAATNA

Nucleotide


Download         Length: 357 bp        

>NTDB_id=1029116 NST54_RS18160 WP_368985943.1 3713233..3713589(-) (ssbB) [Caldifermentibacillus hisashii strain FSL K6-0152]
TTGATTAACCAGGTAACATTGGTAGGAAGACTGACGAGGGACCCGGAATTGAAATTAACGCAAGAAGGGGTTGCCTTAAC
AAATATTACGCTGGCAGTGAATCGAAATTATCGGTCCACGAGCGGCAGTATTGAAACAGATTTTGTTCAGTGCACACTCT
GGCGGCGAGCAGCAGAGAACACCGTACAATATTGCCAAAAGGGTTCGATCATTGGAATTATTGGCCGAATCCAGACGCGA
AATTACGAAAATAGTGAAGGGAAAAGGGTTTATGTTACGGAAGTTGTTGCTGATAGTGTCCGCTTTTTGAGAGGCAGGCC
GGCAGAGGACAAGGAAATCGCCGCAACAAATGCATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.385

92.373

0.576
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.282

87.288

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

89.831

0.466
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.396

89.831

0.39
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

89.831

0.381
  ssbA Streptococcus mutans UA159

42.453

89.831

0.381
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

89.831

0.373
  ssbB/cilA Streptococcus pneumoniae D39

41.509

89.831

0.373
  ssbB/cilA Streptococcus pneumoniae R6

41.509

89.831

0.373
  ssbB/cilA Streptococcus mitis SK321

41.509

89.831

0.373
  ssbB/cilA Streptococcus mitis NCTC 12261

40.566

89.831

0.364

Multiple sequence alignment