Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AACH72_RS11975 Genome accession   NZ_AP027931
Coordinates   2644034..2645275 (+) Length   413 a.a.
NCBI ID   WP_010635960.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain VA6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2639034..2650275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH72_RS11950 (VAWG001_23290) ampD 2639422..2639994 (-) 573 WP_208200766.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AACH72_RS11955 (VAWG001_23300) - 2640118..2640588 (+) 471 WP_043171614.1 retropepsin-like aspartic protease -
  AACH72_RS11960 (VAWG001_23310) nadC 2640593..2641450 (+) 858 WP_043171615.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AACH72_RS11965 (VAWG001_23320) - 2641772..2642212 (+) 441 WP_010635961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AACH72_RS11970 (VAWG001_23330) pilB 2642203..2643918 (+) 1716 WP_185450531.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  AACH72_RS11975 (VAWG001_23340) pilC 2644034..2645275 (+) 1242 WP_010635960.1 type II secretion system F family protein Machinery gene
  AACH72_RS11980 (VAWG001_23350) pilD 2645298..2646170 (+) 873 WP_213344272.1 A24 family peptidase Machinery gene
  AACH72_RS11985 (VAWG001_23360) coaE 2646190..2646804 (+) 615 WP_017766418.1 dephospho-CoA kinase -
  AACH72_RS11990 (VAWG001_23370) zapD 2646842..2647564 (+) 723 WP_026141277.1 cell division protein ZapD -
  AACH72_RS11995 (VAWG001_23380) yacG 2647574..2647768 (+) 195 WP_213344273.1 DNA gyrase inhibitor YacG -
  AACH72_RS12000 (VAWG001_23390) mutT 2647829..2648242 (-) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  AACH72_RS12005 (VAWG001_23400) - 2648251..2649429 (-) 1179 WP_213344274.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45468.58 Da        Isoelectric Point: 9.8834

>NTDB_id=102888 AACH72_RS11975 WP_010635960.1 2644034..2645275(+) (pilC) [Aeromonas dhakensis strain VA6]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGARIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=102888 AACH72_RS11975 WP_010635960.1 2644034..2645275(+) (pilC) [Aeromonas dhakensis strain VA6]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGTCAGGGGCTCTTCTCCAAGGGCGGCGCCAGGATCAAGCCGATGGACATTGCCGTCGTCTCTCGC
CAGATCACCACCATGCTGTCGGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACAATGGTCATCCTGGT
CGCCATTGTCGTCACTTCCATTCTGCTGCTGTTTGTCATTCCGCAGTTTGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGCGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCTGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCTACCATCTTCGAACAAGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

48.241

96.368

0.465
  pilC Vibrio campbellii strain DS40M4

47.607

96.126

0.458
  pilG Neisseria meningitidis 44/76-A

40.247

98.063

0.395
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment