Detailed information NTG0102889

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AACH72_RS11980
• Genome accession: NZ_AP027931
• Coordinates: 2645298..2646170 (+)
• Length: 290 a.a.
• NCBI ID: WP_213344272.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain VA6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2640298..2651170

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACH72_RS11960 (VAWG001_23310)	nadC	2640593..2641450 (+)	858	WP_043171615.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AACH72_RS11965 (VAWG001_23320)	-	2641772..2642212 (+)	441	WP_010635961.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AACH72_RS11970 (VAWG001_23330)	pilB	2642203..2643918 (+)	1716	WP_185450531.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
AACH72_RS11975 (VAWG001_23340)	pilC	2644034..2645275 (+)	1242	WP_010635960.1	type II secretion system F family protein	Machinery gene
AACH72_RS11980 (VAWG001_23350)	pilD	2645298..2646170 (+)	873	WP_213344272.1	A24 family peptidase	Machinery gene
AACH72_RS11985 (VAWG001_23360)	coaE	2646190..2646804 (+)	615	WP_017766418.1	dephospho-CoA kinase	-
AACH72_RS11990 (VAWG001_23370)	zapD	2646842..2647564 (+)	723	WP_026141277.1	cell division protein ZapD	-
AACH72_RS11995 (VAWG001_23380)	yacG	2647574..2647768 (+)	195	WP_213344273.1	DNA gyrase inhibitor YacG	-
AACH72_RS12000 (VAWG001_23390)	mutT	2647829..2648242 (-)	414	WP_005305665.1	8-oxo-dGTP diphosphatase MutT	-
AACH72_RS12005 (VAWG001_23400)	-	2648251..2649429 (-)	1179	WP_213344274.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32497.85 Da
• Isoelectric Point: 6.7410

>NTDB_id=102889 AACH72_RS11980 WP_213344272.1 2645298..2646170(+) (pilD) [Aeromonas dhakensis strain VA6]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=102889 AACH72_RS11980 WP_213344272.1 2645298..2646170(+) (pilD) [Aeromonas dhakensis strain VA6]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGTTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGCTGACAGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCGCCCCAGGCTGGGGTT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCATTGCTGTGGGGCGGCCTGCTGTTCAATCTGACAGGGGGTTTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTATTGCTGCTCTCCTCTCTG
GTCGGCGCCATCATAGGGATCAGTCTCATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.888	98.621	0.61
pilD	Vibrio campbellii strain DS40M4	58.131	99.655	0.579
pilD	Acinetobacter baumannii D1279779	54.577	97.931	0.534
pilD	Acinetobacter nosocomialis M2	54.577	97.931	0.534
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462