Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QUE46_RS14440 Genome accession   NZ_AP027922
Coordinates   3207443..3208672 (+) Length   409 a.a.
NCBI ID   WP_286245367.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. MM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3202443..3213672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE46_RS14415 (PspMM1_28100) pdhR 3202635..3203384 (-) 750 WP_089348719.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  QUE46_RS14420 (PspMM1_28110) ampE 3203987..3204838 (-) 852 WP_286245363.1 beta-lactamase regulator AmpE -
  QUE46_RS14425 (PspMM1_28120) ampD 3204852..3205406 (-) 555 WP_286245364.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QUE46_RS14430 (PspMM1_28130) nadC 3205624..3206469 (+) 846 WP_286245365.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QUE46_RS14435 (PspMM1_28140) pilA2 3206940..3207377 (+) 438 WP_286245366.1 pilin Machinery gene
  QUE46_RS14440 (PspMM1_28150) pilC 3207443..3208672 (+) 1230 WP_286245367.1 type II secretion system F family protein Machinery gene
  QUE46_RS14445 (PspMM1_28160) pilD 3208844..3209746 (+) 903 WP_286245368.1 A24 family peptidase Machinery gene
  QUE46_RS14450 (PspMM1_28170) coaE 3209748..3210368 (+) 621 WP_286245369.1 dephospho-CoA kinase -
  QUE46_RS14455 (PspMM1_28180) pilB 3210514..3212190 (+) 1677 WP_286245370.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QUE46_RS14460 (PspMM1_28190) yacG 3212243..3212473 (+) 231 WP_286245371.1 DNA gyrase inhibitor YacG -
  QUE46_RS14465 (PspMM1_28200) - 3212546..3213037 (-) 492 WP_286245372.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44354.40 Da        Isoelectric Point: 9.6698

>NTDB_id=102844 QUE46_RS14440 WP_286245367.1 3207443..3208672(+) (pilC) [Pseudoalteromonas sp. MM1]
MAKNNDGKSLDTFIWVGVSARGKRMEGELTGSTIALVKAQLRKQGITPSKVKRKPKPLFGIKSVQKIAPKDIALVTRQIA
TMLMAGVPLIQAIEMIGTGSTNKSVGKLMETIGDEVKAGQPLSQALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALY
KEKSEALKSKIKKAMFYPIAVLIVALIVTSILLIFVVPQFQDIFSGFGAELPAFTLFVIAISEFMQEYWWVALIIIVGSG
WVYKEALLRSLKLRDTTDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEV
SSGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIVAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=102844 QUE46_RS14440 WP_286245367.1 3207443..3208672(+) (pilC) [Pseudoalteromonas sp. MM1]
ATGGCTAAAAATAACGATGGAAAAAGTCTAGATACTTTTATTTGGGTAGGTGTGAGCGCTCGTGGTAAACGTATGGAAGG
TGAGCTTACTGGTTCGACCATTGCCTTAGTGAAAGCTCAGCTTAGAAAACAAGGTATCACCCCTTCAAAAGTTAAACGCA
AACCTAAACCGTTATTTGGTATAAAAAGCGTTCAAAAAATTGCGCCTAAAGATATTGCTTTAGTTACACGCCAAATAGCC
ACCATGTTAATGGCCGGCGTCCCCTTAATTCAAGCCATTGAAATGATAGGTACAGGTTCTACTAACAAAAGTGTTGGTAA
GTTGATGGAGACCATTGGTGATGAAGTTAAAGCAGGCCAACCTCTCTCACAGGCACTTAGAAAACACCCTCGCTATTTTG
ATGATTTGTATTGTGATTTAGTGGCATCGGGCGAGCAATCGGGTGCGCTTGATAAAATATTTGACCGGGTAGCTTTATAT
AAAGAAAAATCTGAAGCGCTTAAGTCAAAAATTAAAAAGGCGATGTTTTATCCTATTGCGGTTTTAATTGTTGCATTAAT
AGTTACCTCCATATTATTAATTTTTGTGGTACCTCAGTTTCAGGATATTTTTAGTGGCTTTGGTGCAGAGCTACCTGCCT
TTACCTTGTTTGTAATAGCCATCTCTGAGTTTATGCAGGAATACTGGTGGGTTGCGCTAATTATAATTGTTGGTAGTGGC
TGGGTTTATAAAGAAGCACTCCTTAGAAGTTTAAAACTTAGAGATACAACCGATCGCGCTATATTAAAACTCCCTGTAAT
TGGCATGATTTTAAATAAAGCGGCTGTTGCCCGTTACGCCCGTACACTTTCGACCACTTTTGCAGCAGGTGTACCACTGG
TTGATGCACTCGACTCAGCTGCAGGGGCATCCGGCAATGCCGTTTATCGCTATGCTATTTTAGATATTAAAGCAGAAGTG
AGCTCGGGTAATCAAATGAACTGGGCGATGCGTAACTCTAAAATATTCCCCGATATGGTTATTCAAATGGTAGCCATTGG
TGAAGAGTCTGGCTCGCTTGATGGCATGCTTGCCAAAGTAGCGACTATTTACGAGCAAGAGGTGGATGATGCCGTTGATG
GCTTATCTAGCTTGTTAGAGCCGCTTATCATGGCAGTGCTGGGTGTGCTCGTCGGTGGCTTAATTGTGGCTATGTACTTG
CCAATTTTCCAGTTAGGCTCTGTAATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.469

97.066

0.606
  pilC Legionella pneumophila strain ERS1305867

54.68

99.267

0.543
  pilC Acinetobacter baylyi ADP1

54.613

98.044

0.535
  pilC Acinetobacter baumannii D1279779

54.25

97.8

0.531
  pilC Vibrio cholerae strain A1552

44.279

98.289

0.435
  pilG Neisseria meningitidis 44/76-A

42.754

100

0.433
  pilC Vibrio campbellii strain DS40M4

43.596

99.267

0.433
  pilG Neisseria gonorrhoeae MS11

42.512

100

0.43

Multiple sequence alignment