Detailed information NTG0102845

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QUE46_RS14445
• Genome accession: NZ_AP027922
• Coordinates: 3208844..3209746 (+)
• Length: 300 a.a.
• NCBI ID: WP_286245368.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. MM1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3203844..3214746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUE46_RS14420 (PspMM1_28110)	ampE	3203987..3204838 (-)	852	WP_286245363.1	beta-lactamase regulator AmpE	-
QUE46_RS14425 (PspMM1_28120)	ampD	3204852..3205406 (-)	555	WP_286245364.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
QUE46_RS14430 (PspMM1_28130)	nadC	3205624..3206469 (+)	846	WP_286245365.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QUE46_RS14435 (PspMM1_28140)	pilA2	3206940..3207377 (+)	438	WP_286245366.1	pilin	Machinery gene
QUE46_RS14440 (PspMM1_28150)	pilC	3207443..3208672 (+)	1230	WP_286245367.1	type II secretion system F family protein	Machinery gene
QUE46_RS14445 (PspMM1_28160)	pilD	3208844..3209746 (+)	903	WP_286245368.1	A24 family peptidase	Machinery gene
QUE46_RS14450 (PspMM1_28170)	coaE	3209748..3210368 (+)	621	WP_286245369.1	dephospho-CoA kinase	-
QUE46_RS14455 (PspMM1_28180)	pilB	3210514..3212190 (+)	1677	WP_286245370.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QUE46_RS14460 (PspMM1_28190)	yacG	3212243..3212473 (+)	231	WP_286245371.1	DNA gyrase inhibitor YacG	-
QUE46_RS14465 (PspMM1_28200)	-	3212546..3213037 (-)	492	WP_286245372.1	Spy/CpxP family protein refolding chaperone	-
QUE46_RS14470 (PspMM1_28210)	-	3213213..3213902 (+)	690	WP_004588608.1	response regulator	-

Sequence

Protein

• Length: 300 a.a.
• Molecular weight: 33031.25 Da
• Isoelectric Point: 6.8428

>NTDB_id=102845 QUE46_RS14445 WP_286245368.1 3208844..3209746(+) (pilD) [Pseudoalteromonas sp. MM1]
MENFFLDITTAMQSQQWLYFLTVGLVSLCIGSFLNVVIYRLPLMMQREWQSECRLLLEDELTAKPSNASSNEPFNLGKPN
STCPKCKTAIKPWQNIPIISWIVLKGKCANCSNPISARYPIVEAITALLSLVVAYRFGATEQALLYIFVTWILVALTFID
IDHMLLPDQLTLPLVWLALIAAVIGVTISPSDAIIGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSL
LTIILLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWITLLWGAQIQATYFNLIGY

Nucleotide

• Length: 903 bp

>NTDB_id=102845 QUE46_RS14445 WP_286245368.1 3208844..3209746(+) (pilD) [Pseudoalteromonas sp. MM1]
ATGGAAAATTTTTTTCTTGATATAACGACTGCGATGCAAAGTCAGCAGTGGTTATATTTTTTGACTGTGGGCTTAGTAAG
CCTGTGTATTGGTAGTTTTTTAAATGTTGTGATTTACCGATTGCCACTGATGATGCAGCGAGAATGGCAAAGTGAATGCA
GATTATTATTAGAAGATGAACTCACAGCTAAACCTTCAAATGCTAGCTCTAACGAGCCATTTAATTTAGGAAAGCCTAAT
TCTACCTGCCCTAAATGCAAAACGGCGATTAAGCCTTGGCAAAATATTCCAATTATTAGTTGGATTGTGCTTAAAGGTAA
ATGCGCTAATTGCAGTAACCCAATATCAGCGCGCTACCCAATAGTTGAAGCCATTACCGCACTATTAAGTTTAGTTGTTG
CCTACCGCTTTGGTGCTACAGAGCAGGCTCTTTTATATATTTTTGTTACTTGGATTTTAGTCGCGCTCACCTTTATTGAT
ATTGACCACATGTTACTGCCTGATCAGCTTACTTTACCGCTAGTATGGCTTGCGCTTATAGCCGCTGTAATTGGCGTAAC
AATAAGCCCGAGTGATGCGATAATCGGAGCCGCCTGCGGCTATTTAAGCCTGTGGAGTGTGTTTTGGTTGTTTAAGCTAT
TAACCGGCAAGGAAGGCATGGGCTATGGCGATTTTAAGTTACTAGCTGTGTTTGGTGCTCTACTTGGGTGGCAATCGCTA
TTAACCATTATTTTGCTTTCAAGTGTGGTTGGCGCCATTATTGGTATTGCCCTTTTAAGCATTCAAGGTAAAGACAAAGC
AACCCCTATCCCATTTGGCCCCTACTTAGCTATAGCAGGTTGGATAACACTTTTGTGGGGCGCTCAAATTCAAGCTACCT
ATTTTAATTTAATTGGTTACTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (148-256)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.778	96	0.507
pilD	Vibrio cholerae strain A1552	53.737	93.667	0.503
pilD	Acinetobacter baumannii D1279779	53.43	92.333	0.493
pilD	Acinetobacter nosocomialis M2	53.43	92.333	0.493
pilD	Neisseria gonorrhoeae MS11	44.961	86	0.387