Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AB4L27_RS14465 | Genome accession | NZ_CP162907 |
| Coordinates | 3090442..3090726 (+) | Length | 94 a.a. |
| NCBI ID | WP_053807497.1 | Uniprot ID | - |
| Organism | Vibrio diabolicus strain 3098 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3085442..3095726
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4L27_RS14455 (AB4L27_14455) | - | 3087884..3088156 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| AB4L27_RS14460 (AB4L27_14460) | ppiD | 3088358..3090217 (+) | 1860 | WP_085343448.1 | peptidylprolyl isomerase | - |
| AB4L27_RS14465 (AB4L27_14465) | comEA | 3090442..3090726 (+) | 285 | WP_053807497.1 | ComEA family DNA-binding protein | Machinery gene |
| AB4L27_RS14470 (AB4L27_14470) | rrtA | 3090825..3091376 (-) | 552 | WP_085343449.1 | rhombosortase | - |
| AB4L27_RS14475 (AB4L27_14475) | - | 3091380..3091994 (+) | 615 | WP_258684034.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| AB4L27_RS14480 (AB4L27_14480) | - | 3092001..3093323 (-) | 1323 | WP_368848850.1 | anti-phage deoxyguanosine triphosphatase | - |
| AB4L27_RS14485 (AB4L27_14485) | yfbR | 3093339..3093923 (-) | 585 | WP_025766954.1 | 5'-deoxynucleotidase | - |
| AB4L27_RS14490 (AB4L27_14490) | - | 3094014..3095228 (-) | 1215 | WP_005390543.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10292.91 Da Isoelectric Point: 5.1423
>NTDB_id=1027991 AB4L27_RS14465 WP_053807497.1 3090442..3090726(+) (comEA) [Vibrio diabolicus strain 3098]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKAAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKAAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=1027991 AB4L27_RS14465 WP_053807497.1 3090442..3090726(+) (comEA) [Vibrio diabolicus strain 3098]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCGCCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAGCGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCGCCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAGCGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
88.298 |
100 |
0.883 |
| comEA | Vibrio campbellii strain DS40M4 |
73.684 |
100 |
0.745 |
| comEA | Vibrio cholerae C6706 |
61.957 |
97.872 |
0.606 |
| comEA | Vibrio cholerae strain A1552 |
61.957 |
97.872 |
0.606 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
49.383 |
86.17 |
0.426 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
58.065 |
65.957 |
0.383 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
39.326 |
94.681 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |