Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB4073_RS17525 Genome accession   NZ_CP162643
Coordinates   3727459..3728685 (+) Length   408 a.a.
NCBI ID   WP_368678137.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3722459..3733685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS17490 (AB4073_17490) rimP 3723129..3723653 (-) 525 WP_016144169.1 ribosome maturation factor RimP -
  AB4073_RS17510 (AB4073_17510) secG 3724291..3724620 (-) 330 WP_017398731.1 preprotein translocase subunit SecG -
  AB4073_RS17515 (AB4073_17515) tpiA 3724633..3725427 (-) 795 WP_368678135.1 triose-phosphate isomerase -
  AB4073_RS17520 (AB4073_17520) pilB 3725719..3727431 (+) 1713 WP_368678136.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB4073_RS17525 (AB4073_17525) pilC 3727459..3728685 (+) 1227 WP_368678137.1 type II secretion system F family protein Machinery gene
  AB4073_RS17530 (AB4073_17530) pilD 3728685..3729545 (+) 861 WP_368678138.1 A24 family peptidase Machinery gene
  AB4073_RS17535 (AB4073_17535) coaE 3729547..3730143 (+) 597 WP_062849621.1 dephospho-CoA kinase -
  AB4073_RS17540 (AB4073_17540) - 3730140..3731054 (-) 915 WP_062849622.1 DMT family transporter -
  AB4073_RS17545 (AB4073_17545) rlmB 3731090..3731839 (-) 750 WP_171430415.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AB4073_RS17550 (AB4073_17550) - 3731942..3732268 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  AB4073_RS17555 (AB4073_17555) - 3732345..3733655 (-) 1311 WP_239935761.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45068.55 Da        Isoelectric Point: 9.8960

>NTDB_id=1027778 AB4073_RS17525 WP_368678137.1 3727459..3728685(+) (pilC) [Acinetobacter lactucae strain 128-92]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGITVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1027778 AB4073_RS17525 WP_368678137.1 3727459..3728685(+) (pilC) [Acinetobacter lactucae strain 128-92]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGATAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACGATTTTTACCAGACAACTTGCAACA
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGCTTAGAAAACCCAGCCATGCGCGAGGT
AGTACTTGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACTTTTGCTTCGGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTATTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAACAGAAAATCAAAAAAGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGATTGT
TACCATTATTTTGATGGTTAAAGTCGTGCCTGTGTTTCAAGACCTGTTTTCATCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATCATTGTGATTGGAGCAATTATTGCT
GCATTTTTGGAAGCCAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGATAAACTCACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTACAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCAGGTGTTCCGCTTATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTTATTTATGAACAAGCCGTCATGAAAATTCGTGAAGATGTGGCT
ACAGGCCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTTGTAGGTGGGCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

60

99.265

0.596
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.831

100

0.409
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment