Detailed information NTG1027779

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4073_RS17530
• Genome accession: NZ_CP162643
• Coordinates: 3728685..3729545 (+)
• Length: 286 a.a.
• NCBI ID: WP_368678138.1
• Uniprot ID: -
• Organism: Acinetobacter lactucae strain 128-92
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3723685..3734545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4073_RS17510 (AB4073_17510)	secG	3724291..3724620 (-)	330	WP_017398731.1	preprotein translocase subunit SecG	-
AB4073_RS17515 (AB4073_17515)	tpiA	3724633..3725427 (-)	795	WP_368678135.1	triose-phosphate isomerase	-
AB4073_RS17520 (AB4073_17520)	pilB	3725719..3727431 (+)	1713	WP_368678136.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB4073_RS17525 (AB4073_17525)	pilC	3727459..3728685 (+)	1227	WP_368678137.1	type II secretion system F family protein	Machinery gene
AB4073_RS17530 (AB4073_17530)	pilD	3728685..3729545 (+)	861	WP_368678138.1	A24 family peptidase	Machinery gene
AB4073_RS17535 (AB4073_17535)	coaE	3729547..3730143 (+)	597	WP_062849621.1	dephospho-CoA kinase	-
AB4073_RS17540 (AB4073_17540)	-	3730140..3731054 (-)	915	WP_062849622.1	DMT family transporter	-
AB4073_RS17545 (AB4073_17545)	rlmB	3731090..3731839 (-)	750	WP_171430415.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AB4073_RS17550 (AB4073_17550)	-	3731942..3732268 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
AB4073_RS17555 (AB4073_17555)	-	3732345..3733655 (-)	1311	WP_239935761.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32330.80 Da
• Isoelectric Point: 6.4269

>NTDB_id=1027779 AB4073_RS17530 WP_368678138.1 3728685..3729545(+) (pilD) [Acinetobacter lactucae strain 128-92]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLMLRGKCGYCQYPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1027779 AB4073_RS17530 WP_368678138.1 3728685..3729545(+) (pilD) [Acinetobacter lactucae strain 128-92]
ATGCAAGAAATTATTGCTTATTTCATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTATTGAGCCTGTGTATTGG
TAGTTTTTTGAATGTAGTAATTTATCGCACCCCAAGAATGATGGAGCAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCTGAGCAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAGCCTGCTTCATCATGTCCTGAGTGCCATCAACCC
ATCCGTTGGTATCAAAATATTCCTGTCATAAGCTGGTTGATGTTAAGAGGAAAATGTGGCTATTGCCAATATCCCATTAG
TATTCGTTATCCAGCGATTGAACTACTCACTATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTTGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCCGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACATTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGCTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTGGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTGCGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Acinetobacter baumannii D1279779	95.105	100	0.951
pilD	Vibrio cholerae strain A1552	52.574	95.105	0.5
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	47.328	91.608	0.434