Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB4P93_RS16185 Genome accession   NZ_CP162596
Coordinates   3398352..3399566 (+) Length   404 a.a.
NCBI ID   WP_395593182.1    Uniprot ID   -
Organism   Pseudomonas sp. B26140     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3393352..3404566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P93_RS16165 (AB4P93_16145) - 3394770..3395069 (+) 300 WP_210705186.1 DUF2845 domain-containing protein -
  AB4P93_RS16170 (AB4P93_16150) - 3395335..3395691 (-) 357 WP_150597113.1 BON domain-containing protein -
  AB4P93_RS16175 (AB4P93_16155) - 3395991..3396422 (-) 432 WP_210705185.1 pilin -
  AB4P93_RS16180 (AB4P93_16160) pilB 3396649..3398349 (+) 1701 WP_210705183.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB4P93_RS16185 (AB4P93_16165) pilC 3398352..3399566 (+) 1215 WP_395593182.1 type II secretion system F family protein Machinery gene
  AB4P93_RS16190 (AB4P93_16170) pilD 3399568..3400440 (+) 873 WP_210705179.1 A24 family peptidase Machinery gene
  AB4P93_RS16195 (AB4P93_16175) coaE 3400437..3401060 (+) 624 WP_210705178.1 dephospho-CoA kinase -
  AB4P93_RS16200 (AB4P93_16180) yacG 3401057..3401257 (+) 201 WP_210705177.1 DNA gyrase inhibitor YacG -
  AB4P93_RS16205 (AB4P93_16185) - 3401263..3401478 (-) 216 WP_042561116.1 hypothetical protein -
  AB4P93_RS16210 (AB4P93_16190) - 3401544..3402233 (-) 690 WP_210705176.1 energy-coupling factor ABC transporter permease -
  AB4P93_RS16215 (AB4P93_16195) - 3402540..3403535 (+) 996 WP_395593183.1 TRAP transporter substrate-binding protein -
  AB4P93_RS16220 (AB4P93_16200) - 3403609..3404241 (+) 633 WP_210705175.1 TRAP transporter small permease -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44088.76 Da        Isoelectric Point: 10.0363

>NTDB_id=1027338 AB4P93_RS16185 WP_395593182.1 3398352..3399566(+) (pilC) [Pseudomonas sp. B26140]
MAVKAAKISVYAWEGTDRKGSKLSGELSGQNPALIKAQLRKQGINPGKVRKKTASLFSFGKRIKPRDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEIAAGNSFANALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFESVFSGFGAELPAFTLLVISLSEFMQQWWWAILVALVAAFFGTR
HALKTSQAMRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRTTGVFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSMEPFIMVVLGVIVGGLVVAMYLPIFQL
GSAI

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1027338 AB4P93_RS16185 WP_395593182.1 3398352..3399566(+) (pilC) [Pseudomonas sp. B26140]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTCTACGCCTGGGAAGGCACGGACAGGAAAGGCAGCAAACTCAGCGGTGAATT
AAGCGGGCAGAACCCGGCACTGATCAAGGCTCAACTGCGCAAGCAAGGGATCAATCCGGGCAAGGTGCGTAAAAAAACCG
CCTCGCTTTTCAGCTTCGGCAAACGCATCAAACCCCGGGACATCGCCCTGTTCACGCGGCAGATGGCAACCATGATGAAG
GCTGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCGGTGAGGGCTTCGAAAACCCGGCCATGCGCAAACTGGTCGACGA
GGTGAAACAGGAGATCGCCGCCGGTAACAGCTTTGCCAACGCTCTGCGCAAGAAGCCGCAGTACTTCGATGAGTTGTATT
GCAACCTCGTGGATGCCGGCGAACAGTCCGGCGCCCTCGACACGTTGCTGGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCCCTCAAGGCCAAGATCAAGAAAGCCATGACTTACCCCACCGCCGTGGTGCTGGTTGCAGCCGTGGTGACCGGGAT
TCTGCTGGTGAAAGTGGTGCCGCAGTTCGAGTCGGTTTTTTCCGGTTTTGGCGCCGAGTTGCCGGCCTTCACCCTTCTGG
TCATCAGCCTCTCGGAGTTCATGCAGCAATGGTGGTGGGCGATACTCGTTGCGCTGGTGGCCGCTTTTTTCGGCACCCGC
CATGCGCTGAAAACATCCCAGGCCATGCGCGATCGCAAAGACACCTGGCTATTGAAGCTGCCGTTGGTGGGCACGTTGAT
GTACAAATCTGCCGTTGCACGCTTCGCCCGGACCCTGTCGACCACATTTGCTGCCGGCGTGCCGTTGGTGGAAGCGCTCG
ACTCGGTGGCCGGCGCCACGGGCAACGTGGTGTTCAAGCGCGCGGTATTGCGCATCCGCCAGGATGTTTCCACGGGCATG
CAGCTGAATTTTTCCATGCGCACCACCGGGGTTTTTCCCAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCGCTGGACGAAATGCTCGACAAGGTCGCCGGGTTTTACGAGGACGAAGTGGATAACATGGTCGACAACCTCACCAGCA
TGGAGCCGTTCATCATGGTCGTCCTGGGGGTGATTGTCGGCGGTCTGGTGGTGGCGATGTACCTGCCGATCTTCCAACTC
GGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-396)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.815

100

0.75
  pilC Acinetobacter baylyi ADP1

60.049

100

0.606
  pilC Acinetobacter baumannii D1279779

58.333

100

0.589
  pilC Legionella pneumophila strain ERS1305867

54

99.01

0.535
  pilG Neisseria gonorrhoeae MS11

43.672

99.752

0.436
  pilG Neisseria meningitidis 44/76-A

43.176

99.752

0.431
  pilC Vibrio cholerae strain A1552

43.687

98.02

0.428
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.413
  pilC Thermus thermophilus HB27

38.903

99.257

0.386

Multiple sequence alignment