Detailed information NTG1027339

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4P93_RS16190
• Genome accession: NZ_CP162596
• Coordinates: 3399568..3400440 (+)
• Length: 290 a.a.
• NCBI ID: WP_210705179.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B26140
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3394568..3405440

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P93_RS16165 (AB4P93_16145)	-	3394770..3395069 (+)	300	WP_210705186.1	DUF2845 domain-containing protein	-
AB4P93_RS16170 (AB4P93_16150)	-	3395335..3395691 (-)	357	WP_150597113.1	BON domain-containing protein	-
AB4P93_RS16175 (AB4P93_16155)	-	3395991..3396422 (-)	432	WP_210705185.1	pilin	-
AB4P93_RS16180 (AB4P93_16160)	pilB	3396649..3398349 (+)	1701	WP_210705183.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB4P93_RS16185 (AB4P93_16165)	pilC	3398352..3399566 (+)	1215	WP_395593182.1	type II secretion system F family protein	Machinery gene
AB4P93_RS16190 (AB4P93_16170)	pilD	3399568..3400440 (+)	873	WP_210705179.1	A24 family peptidase	Machinery gene
AB4P93_RS16195 (AB4P93_16175)	coaE	3400437..3401060 (+)	624	WP_210705178.1	dephospho-CoA kinase	-
AB4P93_RS16200 (AB4P93_16180)	yacG	3401057..3401257 (+)	201	WP_210705177.1	DNA gyrase inhibitor YacG	-
AB4P93_RS16205 (AB4P93_16185)	-	3401263..3401478 (-)	216	WP_042561116.1	hypothetical protein	-
AB4P93_RS16210 (AB4P93_16190)	-	3401544..3402233 (-)	690	WP_210705176.1	energy-coupling factor ABC transporter permease	-
AB4P93_RS16215 (AB4P93_16195)	-	3402540..3403535 (+)	996	WP_395593183.1	TRAP transporter substrate-binding protein	-
AB4P93_RS16220 (AB4P93_16200)	-	3403609..3404241 (+)	633	WP_210705175.1	TRAP transporter small permease	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32215.55 Da
• Isoelectric Point: 7.2861

>NTDB_id=1027339 AB4P93_RS16190 WP_210705179.1 3399568..3400440(+) (pilD) [Pseudomonas sp. B26140]
MPIDELFAVYPLAFVCTALLLGLIVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPGETPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLCLRGRCSACAAPISKRYPLTELSCGLLSALIAWQVGFGWPACLLIFLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDAMWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRVREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1027339 AB4P93_RS16190 WP_210705179.1 3399568..3400440(+) (pilD) [Pseudomonas sp. B26140]
ATGCCTATCGACGAACTCTTTGCCGTTTACCCACTGGCCTTTGTCTGCACGGCGTTGCTGCTCGGTCTTATCGTCGGCAG
CTTTCTCAATGTGCTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGACGTGCTCGGTC
TGCCCGGCGAAACGCCGCTGCCGACCTACAACCTGATGCTGCCGCACTCAGAGTGTCCGCACTGCGCACATCGAATTCGT
GCGTGGGAAAACATCCCGCTGCTCAGCTATCTGTGCCTGCGCGGACGCTGCTCCGCGTGCGCAGCGCCGATCAGCAAACG
CTATCCACTGACCGAACTGAGTTGTGGACTGCTTTCGGCGCTTATCGCCTGGCAGGTGGGTTTTGGCTGGCCGGCCTGTC
TGTTGATCTTCCTCACCTGGGGCTTGCTGGCGATGAGCCTGATCGACACCGAGCATCAATTGCTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTGCCGCTGCACGATGCCATGTGGGGCGCGGT
GGCCGGTTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTGACCGGCAAGGACGGCATCGGTCACGGTGATT
TCAAGCTGCTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCTTCGCTGGTGGGA
GCGATTATCGGGGTGATTTTGCTGCGTGTGCGCGAGCAGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.965	97.241	0.534
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459
pilD	Acinetobacter baumannii D1279779	48.889	93.103	0.455
pilD	Acinetobacter nosocomialis M2	48.889	93.103	0.455