Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB4P91_RS10075 Genome accession   NZ_CP162590
Coordinates   2257309..2258526 (-) Length   405 a.a.
NCBI ID   WP_150595330.1    Uniprot ID   -
Organism   Pseudomonas sp. B21128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2252309..2263526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P91_RS10045 (AB4P91_10035) - 2252942..2254396 (-) 1455 WP_047303280.1 TrkH family potassium uptake protein -
  AB4P91_RS10050 (AB4P91_10040) - 2254642..2255331 (+) 690 WP_395604723.1 energy-coupling factor ABC transporter permease -
  AB4P91_RS10055 (AB4P91_10045) - 2255397..2255612 (+) 216 WP_395604724.1 hypothetical protein -
  AB4P91_RS10060 (AB4P91_10050) yacG 2255618..2255818 (-) 201 WP_016773149.1 DNA gyrase inhibitor YacG -
  AB4P91_RS10065 (AB4P91_10055) coaE 2255815..2256438 (-) 624 WP_150597110.1 dephospho-CoA kinase -
  AB4P91_RS10070 (AB4P91_10060) pilD 2256435..2257307 (-) 873 WP_150595329.1 A24 family peptidase Machinery gene
  AB4P91_RS10075 (AB4P91_10065) pilC 2257309..2258526 (-) 1218 WP_150595330.1 type II secretion system F family protein Machinery gene
  AB4P91_RS10080 (AB4P91_10070) pilB 2258529..2260229 (-) 1701 WP_395604725.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB4P91_RS10085 (AB4P91_10075) - 2260455..2260886 (+) 432 WP_150688181.1 pilin -
  AB4P91_RS10090 (AB4P91_10080) - 2261187..2261543 (+) 357 WP_150597113.1 BON domain-containing protein -
  AB4P91_RS10095 (AB4P91_10085) - 2261819..2262118 (-) 300 WP_150597114.1 DUF2845 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44174.89 Da        Isoelectric Point: 10.0363

>NTDB_id=1027290 AB4P91_RS10075 WP_150595330.1 2257309..2258526(-) (pilC) [Pseudomonas sp. B21128]
MAVKAAKISVYAWEGTDRKGSKLSGELSGQNPALIKAQLRKQGISPGKVRKKTASLFSFGKRIKPRDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEIAAGNSFANALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFESVFSGFGAELPAFTLLVISLSEFMQQWWWAILVALVAAFFGTR
HALKTSQAMRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRTTGVFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1027290 AB4P91_RS10075 WP_150595330.1 2257309..2258526(-) (pilC) [Pseudomonas sp. B21128]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTCTACGCCTGGGAAGGTACGGACAGGAAAGGCAGCAAACTCAGCGGCGAATT
AAGCGGGCAGAACCCGGCACTGATCAAGGCTCAACTGCGCAAGCAAGGAATCAGTCCGGGCAAGGTGCGTAAAAAAACCG
CCTCGCTGTTTAGCTTCGGCAAACGCATCAAACCCCGGGACATCGCCCTGTTCACGCGGCAGATGGCGACCATGATGAAG
GCTGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCGGTGAGGGCTTCGAAAACCCGGCCATGCGCAAACTGGTCGACGA
GGTGAAGCAGGAGATCGCCGCCGGCAACAGTTTCGCCAACGCCCTGCGCAAGAAGCCGCAGTATTTCGATGAGTTGTATT
GCAACCTCGTGGATGCCGGCGAACAGTCCGGTGCCCTCGACACGTTGCTGGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCCACCGCCGTGGTGCTGGTTGCAGCCGTGGTGACCGGGAT
TCTGCTGGTGAAAGTGGTGCCGCAGTTCGAGTCGGTTTTTTCCGGTTTTGGCGCCGAATTGCCGGCCTTTACCCTGCTGG
TCATCAGCCTGTCGGAGTTCATGCAGCAATGGTGGTGGGCGATACTCGTTGCGCTGGTGGCCGCTTTTTTCGGCACCCGC
CATGCGCTGAAAACATCCCAGGCCATGCGCGATCGCAAAGATACCTGGCTATTGAAACTGCCGTTGGTGGGCACGCTGAT
GTACAAATCTGCCGTTGCACGCTTCGCCCGGACCCTGTCGACCACATTTGCTGCCGGCGTGCCGTTGGTGGAAGCGCTCG
ACTCGGTGGCCGGCGCCACGGGCAACGTGGTGTTCAAGCGCGCGGTATTGCGCATCCGCCAGGATGTTTCCACGGGCATG
CAGCTGAATTTTTCCATGCGCACCACCGGGGTTTTTCCCAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAATCCGG
TGCGCTGGACGAGATGCTCGACAAGGTCGCCGGGTTTTACGAGGACGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TCATGGAGCCGTTCATCATGGTCGTCCTGGGGGTGATTGTCGGGGGTCTGGTGGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.815

100

0.748
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

58.333

100

0.588
  pilC Legionella pneumophila strain ERS1305867

54.25

98.765

0.536
  pilG Neisseria gonorrhoeae MS11

43.672

99.506

0.435
  pilG Neisseria meningitidis 44/76-A

43.176

99.506

0.43
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

38.903

99.012

0.385

Multiple sequence alignment