Detailed information NTG1027289

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4P91_RS10070
• Genome accession: NZ_CP162590
• Coordinates: 2256435..2257307 (-)
• Length: 290 a.a.
• NCBI ID: WP_150595329.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21128
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2251435..2262307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P91_RS10040 (AB4P91_10030)	-	2251842..2252837 (-)	996	WP_150597108.1	TRAP transporter substrate-binding protein	-
AB4P91_RS10045 (AB4P91_10035)	-	2252942..2254396 (-)	1455	WP_047303280.1	TrkH family potassium uptake protein	-
AB4P91_RS10050 (AB4P91_10040)	-	2254642..2255331 (+)	690	WP_395604723.1	energy-coupling factor ABC transporter permease	-
AB4P91_RS10055 (AB4P91_10045)	-	2255397..2255612 (+)	216	WP_395604724.1	hypothetical protein	-
AB4P91_RS10060 (AB4P91_10050)	yacG	2255618..2255818 (-)	201	WP_016773149.1	DNA gyrase inhibitor YacG	-
AB4P91_RS10065 (AB4P91_10055)	coaE	2255815..2256438 (-)	624	WP_150597110.1	dephospho-CoA kinase	-
AB4P91_RS10070 (AB4P91_10060)	pilD	2256435..2257307 (-)	873	WP_150595329.1	A24 family peptidase	Machinery gene
AB4P91_RS10075 (AB4P91_10065)	pilC	2257309..2258526 (-)	1218	WP_150595330.1	type II secretion system F family protein	Machinery gene
AB4P91_RS10080 (AB4P91_10070)	pilB	2258529..2260229 (-)	1701	WP_395604725.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB4P91_RS10085 (AB4P91_10075)	-	2260455..2260886 (+)	432	WP_150688181.1	pilin	-
AB4P91_RS10090 (AB4P91_10080)	-	2261187..2261543 (+)	357	WP_150597113.1	BON domain-containing protein	-
AB4P91_RS10095 (AB4P91_10085)	-	2261819..2262118 (-)	300	WP_150597114.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32249.57 Da
• Isoelectric Point: 7.2861

>NTDB_id=1027289 AB4P91_RS10070 WP_150595329.1 2256435..2257307(-) (pilD) [Pseudomonas sp. B21128]
MPIDELFAVYPLAFVCTALLLGLIVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPGETPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLCLRGRCSACAAPISKRYPLTELSCGLLSAFIAWQVGFGWPACLLIFLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDAMWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVILLRVREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1027289 AB4P91_RS10070 WP_150595329.1 2256435..2257307(-) (pilD) [Pseudomonas sp. B21128]
ATGCCTATCGACGAACTGTTTGCCGTTTACCCACTGGCCTTTGTCTGCACGGCGCTGCTGCTCGGTCTTATCGTCGGCAG
CTTTCTCAATGTGCTGGTCTGGCGCTTGCCGAAAATGCTCGAACGCGATTGGCGCCAGCAGGCGCAGGACGTGCTCGGTC
TGCCCGGCGAAACGCCGCTGCCGACCTACAACCTGATGCTGCCGCACTCCGAGTGCCCGCACTGCGCACATCGAATTCGT
GCGTGGGAAAACATCCCGCTGCTCAGTTATCTGTGCCTGCGCGGACGCTGCTCCGCGTGTGCAGCGCCGATCAGCAAACG
CTATCCGCTGACCGAGCTGAGTTGTGGACTGCTTTCGGCGTTTATCGCCTGGCAGGTGGGTTTTGGCTGGCCGGCCTGTC
TGTTGATCTTCCTCACCTGGGGCTTGCTGGCGATGAGTCTGATCGACACCGAGCATCAATTGCTGCCCGATGTGCTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTGCCGCTGCACGATGCAATGTGGGGCGCGGT
GGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTGACCGGCAAGGACGGCATCGGTCACGGTGATT
TCAAGCTGCTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCTTCGCTGGTGGGA
GCGATTCTCGGGGTGATTTTGCTGCGTGTGCGCGAGCAGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.965	97.241	0.534
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Neisseria gonorrhoeae MS11	48.889	93.103	0.455
pilD	Acinetobacter baumannii D1279779	48.315	92.069	0.445
pilD	Acinetobacter nosocomialis M2	48.315	92.069	0.445