Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB4P96_RS27690 Genome accession   NZ_CP162589
Coordinates   6054907..6056115 (+) Length   402 a.a.
NCBI ID   WP_395600320.1    Uniprot ID   -
Organism   Pseudomonas sp. B19125     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6049907..6061115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P96_RS27665 (AB4P96_27625) - 6050378..6052534 (-) 2157 WP_395600319.1 DUF1631 domain-containing protein -
  AB4P96_RS27670 (AB4P96_27630) nadC 6052779..6053627 (+) 849 WP_186618175.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB4P96_RS27675 (AB4P96_27635) - 6053682..6053987 (-) 306 WP_017134512.1 DUF6388 family protein -
  AB4P96_RS27685 (AB4P96_27645) - 6054291..6054704 (-) 414 WP_017134511.1 pilin -
  AB4P96_RS27690 (AB4P96_27650) pilC 6054907..6056115 (+) 1209 WP_395600320.1 type II secretion system F family protein Machinery gene
  AB4P96_RS27695 (AB4P96_27655) pilD 6056112..6056978 (+) 867 WP_275942351.1 A24 family peptidase Machinery gene
  AB4P96_RS27700 (AB4P96_27660) coaE 6056975..6057598 (+) 624 WP_017134508.1 dephospho-CoA kinase -
  AB4P96_RS27705 (AB4P96_27665) yacG 6057595..6057795 (+) 201 WP_017134507.1 DNA gyrase inhibitor YacG -
  AB4P96_RS27710 (AB4P96_27670) - 6057792..6058007 (-) 216 WP_003171680.1 hypothetical protein -
  AB4P96_RS27715 (AB4P96_27675) - 6058082..6058771 (-) 690 WP_099550506.1 energy-coupling factor ABC transporter permease -
  AB4P96_RS27720 (AB4P96_27680) - 6058901..6059530 (+) 630 WP_017134504.1 DUF1780 domain-containing protein -
  AB4P96_RS27725 (AB4P96_27685) - 6059620..6059793 (+) 174 WP_017134503.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43328.72 Da        Isoelectric Point: 9.9548

>NTDB_id=1027272 AB4P96_RS27690 WP_395600320.1 6054907..6056115(+) (pilC) [Pseudomonas sp. B19125]
MNDASTIYAWEGTNRKGRRVSGQATGHNLALIKAQLRQQGIYPGRVRKKASHRPYFAAPIKPADIALFTRQLATLLKAGT
ALLQAFDIICEGFENRQMRALIKGLKQEIAAGSSLAAALRKQPRHFDDLYCNLIAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPIAVIVVACLVSAVLLIHVVPQFQNLFAGVNGQLPGFTLLVIALSNFLQHAWWMLALGLSMAITALRHAY
RAYPGFRDGLDAALLNAPLAGTLLRRSAIARYARTLSTTFAAGVPLVQALDSVAGAAGNGLFTKAIEHMRHDVSTGVPLN
QSMAHSGLFPGMAIQMTAIGEESGTLDLMLDKVANHYEADVENLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1027272 AB4P96_RS27690 WP_395600320.1 6054907..6056115(+) (pilC) [Pseudomonas sp. B19125]
ATGAATGACGCTTCAACGATCTACGCCTGGGAAGGCACCAACCGCAAAGGCCGCCGGGTGTCCGGGCAAGCCACCGGGCA
TAACCTGGCACTGATCAAGGCACAGCTGCGCCAGCAGGGGATTTACCCCGGACGCGTGCGCAAAAAGGCTTCGCACCGGC
CATATTTTGCCGCGCCGATAAAACCCGCCGACATCGCGCTGTTCACGCGCCAATTGGCGACCCTGTTAAAGGCAGGCACT
GCGCTGCTGCAGGCGTTCGACATCATCTGCGAAGGCTTCGAAAACCGGCAGATGCGCGCGTTGATAAAAGGCTTGAAGCA
GGAGATTGCCGCCGGTAGTAGCCTGGCAGCAGCGCTGCGCAAACAGCCGCGTCACTTTGATGACTTGTATTGCAACCTGA
TTGCCGCAGGCGAACAGGCAGGCGCCCTGGAAACATTGCTCGAACGGGTGGCGATTCACCTGGAAAAAAGCCAGCAGCTC
AAGGCGCGAATCAAAAAAGCCATGACCTACCCTATCGCCGTGATCGTCGTCGCCTGCCTGGTCAGCGCAGTTTTGCTTAT
TCACGTGGTGCCGCAGTTCCAGAACCTCTTCGCCGGGGTAAACGGCCAACTGCCGGGCTTTACCTTGCTGGTGATTGCGC
TGTCCAACTTCCTGCAGCACGCCTGGTGGATGCTTGCCTTGGGGCTGAGTATGGCAATAACTGCGCTGCGCCATGCCTAT
CGGGCTTACCCGGGGTTTCGTGACGGGCTGGATGCCGCTTTGTTGAACGCGCCCCTGGCTGGCACACTGCTGAGGCGCTC
AGCCATCGCCCGTTACGCCCGTACACTTTCAACCACCTTTGCCGCGGGCGTGCCATTGGTGCAGGCTCTGGACTCCGTGG
CAGGCGCGGCAGGTAATGGGTTGTTCACAAAGGCGATCGAACATATGCGGCACGATGTATCCACAGGTGTGCCGTTGAAC
CAGTCCATGGCCCACAGCGGGCTGTTCCCCGGCATGGCCATCCAGATGACGGCCATCGGTGAAGAGTCGGGCACCCTGGA
CCTCATGCTGGATAAAGTCGCCAACCACTATGAAGCCGATGTGGAAAACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CACTGATCATGGTGGTGTTGGGGGGCATTGTCGGCGCGTTGGTGATTGCGATGTATCTGCCGGTGTTCCAGTTGGGGTCG
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

98.507

0.567
  pilC Acinetobacter baylyi ADP1

52.273

98.507

0.515
  pilC Acinetobacter baumannii D1279779

51.646

98.259

0.507
  pilC Legionella pneumophila strain ERS1305867

47.607

98.756

0.47
  pilG Neisseria gonorrhoeae MS11

40.253

98.259

0.396
  pilG Neisseria meningitidis 44/76-A

39.747

98.259

0.391
  pilC Vibrio campbellii strain DS40M4

38.765

100

0.391
  pilC Vibrio cholerae strain A1552

37.592

100

0.381
  pilC Thermus thermophilus HB27

37.594

99.254

0.373

Multiple sequence alignment