Detailed information NTG1027273

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4P96_RS27695
• Genome accession: NZ_CP162589
• Coordinates: 6056112..6056978 (+)
• Length: 288 a.a.
• NCBI ID: WP_275942351.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B19125
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6051112..6061978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P96_RS27670 (AB4P96_27630)	nadC	6052779..6053627 (+)	849	WP_186618175.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AB4P96_RS27675 (AB4P96_27635)	-	6053682..6053987 (-)	306	WP_017134512.1	DUF6388 family protein	-
AB4P96_RS27685 (AB4P96_27645)	-	6054291..6054704 (-)	414	WP_017134511.1	pilin	-
AB4P96_RS27690 (AB4P96_27650)	pilC	6054907..6056115 (+)	1209	WP_395600320.1	type II secretion system F family protein	Machinery gene
AB4P96_RS27695 (AB4P96_27655)	pilD	6056112..6056978 (+)	867	WP_275942351.1	A24 family peptidase	Machinery gene
AB4P96_RS27700 (AB4P96_27660)	coaE	6056975..6057598 (+)	624	WP_017134508.1	dephospho-CoA kinase	-
AB4P96_RS27705 (AB4P96_27665)	yacG	6057595..6057795 (+)	201	WP_017134507.1	DNA gyrase inhibitor YacG	-
AB4P96_RS27710 (AB4P96_27670)	-	6057792..6058007 (-)	216	WP_003171680.1	hypothetical protein	-
AB4P96_RS27715 (AB4P96_27675)	-	6058082..6058771 (-)	690	WP_099550506.1	energy-coupling factor ABC transporter permease	-
AB4P96_RS27720 (AB4P96_27680)	-	6058901..6059530 (+)	630	WP_017134504.1	DUF1780 domain-containing protein	-
AB4P96_RS27725 (AB4P96_27685)	-	6059620..6059793 (+)	174	WP_017134503.1	DUF3094 family protein	-
AB4P96_RS27730 (AB4P96_27690)	-	6059854..6061152 (+)	1299	WP_017134502.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31590.90 Da
• Isoelectric Point: 8.0888

>NTDB_id=1027273 AB4P96_RS27695 WP_275942351.1 6056112..6056978(+) (pilD) [Pseudomonas sp. B19125]
MSLLLGEQPWVFVGMALVLGLIVGSFLNVLVWRLPKMLVREWRAQAQEILGLPADPAGPVYNLMHPNSCCAHCSQPIRPW
ENIPVLSYLLLKGRCARCRESISARYPFTELACALLSAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDIDHQLLPDVLVLP
LLWLGLVLNSGGLLATLPDALWGAVIGYVCLWSVFWVFKVVTGKDGMGYGDFKLLALLGAWGGWQILPMTLLIASLLGVF
AGLVLMRLRKSQASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1027273 AB4P96_RS27695 WP_275942351.1 6056112..6056978(+) (pilD) [Pseudomonas sp. B19125]
TTGAGCCTGCTGCTGGGTGAACAACCCTGGGTCTTTGTCGGGATGGCGTTGGTGCTCGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGTGCGCGAATGGCGCGCCCAGGCCCAGGAAATACTCGGCCTGCCGG
CCGACCCCGCCGGCCCTGTCTACAACCTGATGCATCCCAACTCGTGCTGTGCGCATTGCAGCCAGCCGATTCGCCCCTGG
GAAAATATCCCGGTACTCAGCTACCTGCTACTCAAGGGGCGCTGCGCCCGCTGCCGCGAGTCTATCAGCGCGCGTTACCC
CTTTACCGAACTGGCCTGTGCGCTGCTCTCGGCCATGGTCGCCTGGCATTTTGGCTTCGGCTGGCAAGCTGGCGCAGTGA
TGCTGCTGAGTTGGGGCCTGCTGGCGATGAGCCTGATCGACATCGATCATCAACTGCTGCCGGATGTGCTGGTGTTGCCA
CTGCTGTGGCTGGGGCTGGTCCTCAATAGCGGCGGCTTGTTGGCGACGCTGCCCGATGCGCTGTGGGGCGCAGTCATAGG
CTATGTGTGCCTGTGGAGCGTGTTCTGGGTGTTCAAGGTGGTCACCGGCAAGGACGGCATGGGTTATGGCGATTTCAAGC
TATTGGCCCTGCTCGGTGCCTGGGGTGGTTGGCAGATCCTGCCGATGACGCTGCTGATAGCGTCGCTGCTGGGCGTGTTC
GCAGGCCTTGTCCTGATGCGTTTGCGCAAGTCCCAGGCATCGGTGCCGATGCCATTTGGCCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.079	96.528	0.493
pilD	Vibrio campbellii strain DS40M4	49.462	96.875	0.479
pilD	Acinetobacter baumannii D1279779	46.57	96.181	0.448
pilD	Acinetobacter nosocomialis M2	45.848	96.181	0.441
pilD	Neisseria gonorrhoeae MS11	48.062	89.583	0.431