Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB4P97_RS19080 Genome accession   NZ_CP162582
Coordinates   4078511..4079728 (+) Length   405 a.a.
NCBI ID   WP_042561112.1    Uniprot ID   A0A9X4BZS4
Organism   Pseudomonas sp. A1230     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4073511..4084728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P97_RS19060 (AB4P97_19015) - 4074929..4075228 (+) 300 WP_115146562.1 DUF2845 domain-containing protein -
  AB4P97_RS19065 (AB4P97_19020) - 4075494..4075850 (-) 357 WP_042561109.1 BON domain-containing protein -
  AB4P97_RS19070 (AB4P97_19025) - 4076150..4076581 (-) 432 WP_042561110.1 pilin -
  AB4P97_RS19075 (AB4P97_19030) pilB 4076808..4078508 (+) 1701 WP_395601472.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB4P97_RS19080 (AB4P97_19035) pilC 4078511..4079728 (+) 1218 WP_042561112.1 type II secretion system F family protein Machinery gene
  AB4P97_RS19085 (AB4P97_19040) pilD 4079730..4080602 (+) 873 WP_150595329.1 A24 family peptidase Machinery gene
  AB4P97_RS19090 (AB4P97_19045) coaE 4080599..4081222 (+) 624 WP_395601473.1 dephospho-CoA kinase -
  AB4P97_RS19095 (AB4P97_19050) yacG 4081219..4081419 (+) 201 WP_042561115.1 DNA gyrase inhibitor YacG -
  AB4P97_RS19100 (AB4P97_19055) - 4081425..4081640 (-) 216 WP_042561116.1 hypothetical protein -
  AB4P97_RS19105 (AB4P97_19060) - 4081706..4082395 (-) 690 WP_042561117.1 energy-coupling factor ABC transporter permease -
  AB4P97_RS19110 (AB4P97_19065) - 4082641..4084095 (+) 1455 WP_395601474.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44220.96 Da        Isoelectric Point: 10.1090

>NTDB_id=1027184 AB4P97_RS19080 WP_042561112.1 4078511..4079728(+) (pilC) [Pseudomonas sp. A1230]
MAVKAAKISVYAWEGTDRKGSKLSGELSGQNPALIKAQLRKQGINPGKVRKKTASLFSFGKRIKPRDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEIAAGNSFANALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFESVFSGFGAELPAFTLLVISLSEFMQQWWWAILVALVAAFFGTR
RALKTSQAMRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRTTGVFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1027184 AB4P97_RS19080 WP_042561112.1 4078511..4079728(+) (pilC) [Pseudomonas sp. A1230]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTCTACGCCTGGGAAGGCACGGACAGGAAAGGCAGCAAACTCAGCGGTGAATT
AAGCGGGCAGAACCCGGCACTGATCAAGGCTCAACTGCGCAAGCAAGGGATCAATCCGGGCAAGGTGCGTAAAAAAACTG
CCTCGCTTTTTAGCTTCGGCAAACGCATCAAGCCCCGGGACATCGCCCTGTTCACGCGGCAGATGGCGACCATGATGAAG
GCTGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCGGTGAGGGCTTCGAAAACCCGGCCATGCGCAAACTGGTCGACGA
GGTGAAACAGGAGATCGCCGCCGGTAACAGTTTCGCCAACGCCCTGCGCAAGAAGCCGCAGTATTTCGATGAGTTGTATT
GCAACCTCGTGGATGCCGGCGAACAGTCCGGCGCCCTCGACACGTTGCTGGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCCACCGCCGTGGTGCTGGTTGCAGCCGTGGTGACCGGGAT
TCTGCTGGTGAAAGTGGTGCCGCAGTTCGAGTCGGTTTTTTCCGGTTTTGGCGCCGAGTTGCCGGCCTTCACCCTGCTGG
TCATCAGCCTCTCGGAATTCATGCAGCAATGGTGGTGGGCGATACTCGTTGCGCTGGTGGCCGCTTTTTTCGGCACCCGC
CGTGCGCTGAAAACATCCCAGGCCATGCGCGATCGCAAAGACACCTGGCTATTGAAGCTGCCGTTGGTGGGCACGCTGAT
GTACAAATCTGCCGTTGCACGCTTCGCCCGGACCCTGTCGACCACATTTGCTGCCGGCGTGCCGTTGGTGGAAGCGCTCG
ACTCGGTAGCCGGCGCCACGGGCAACGTGGTTTTCAAGCGCGCGGTATTGCGCATCCGCCAGGATGTTTCCACGGGTATG
CAGCTGAATTTTTCCATGCGCACCACCGGGGTTTTTCCCAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCGCTGGACGAGATGCTCGACAAGGTCGCCGGGTTTTACGAGGACGAAGTGGATAATATGGTCGACAACCTCACCAGCC
TCATGGAGCCGTTCATCATGGTCGTCCTGGGGGTGATTGTCGGCGGTCTGGTGGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.062

100

0.751
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

58.333

100

0.588
  pilC Legionella pneumophila strain ERS1305867

54

98.765

0.533
  pilG Neisseria gonorrhoeae MS11

43.672

99.506

0.435
  pilG Neisseria meningitidis 44/76-A

43.176

99.506

0.43
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

38.903

99.012

0.385

Multiple sequence alignment