Detailed information NTG1027185

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4P97_RS19085
• Genome accession: NZ_CP162582
• Coordinates: 4079730..4080602 (+)
• Length: 290 a.a.
• NCBI ID: WP_150595329.1
• Uniprot ID: -
• Organism: Pseudomonas sp. A1230
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4074730..4085602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P97_RS19060 (AB4P97_19015)	-	4074929..4075228 (+)	300	WP_115146562.1	DUF2845 domain-containing protein	-
AB4P97_RS19065 (AB4P97_19020)	-	4075494..4075850 (-)	357	WP_042561109.1	BON domain-containing protein	-
AB4P97_RS19070 (AB4P97_19025)	-	4076150..4076581 (-)	432	WP_042561110.1	pilin	-
AB4P97_RS19075 (AB4P97_19030)	pilB	4076808..4078508 (+)	1701	WP_395601472.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB4P97_RS19080 (AB4P97_19035)	pilC	4078511..4079728 (+)	1218	WP_042561112.1	type II secretion system F family protein	Machinery gene
AB4P97_RS19085 (AB4P97_19040)	pilD	4079730..4080602 (+)	873	WP_150595329.1	A24 family peptidase	Machinery gene
AB4P97_RS19090 (AB4P97_19045)	coaE	4080599..4081222 (+)	624	WP_395601473.1	dephospho-CoA kinase	-
AB4P97_RS19095 (AB4P97_19050)	yacG	4081219..4081419 (+)	201	WP_042561115.1	DNA gyrase inhibitor YacG	-
AB4P97_RS19100 (AB4P97_19055)	-	4081425..4081640 (-)	216	WP_042561116.1	hypothetical protein	-
AB4P97_RS19105 (AB4P97_19060)	-	4081706..4082395 (-)	690	WP_042561117.1	energy-coupling factor ABC transporter permease	-
AB4P97_RS19110 (AB4P97_19065)	-	4082641..4084095 (+)	1455	WP_395601474.1	TrkH family potassium uptake protein	-
AB4P97_RS19115 (AB4P97_19070)	-	4084200..4085195 (+)	996	WP_395601475.1	TRAP transporter substrate-binding protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32249.57 Da
• Isoelectric Point: 7.2861

>NTDB_id=1027185 AB4P97_RS19085 WP_150595329.1 4079730..4080602(+) (pilD) [Pseudomonas sp. A1230]
MPIDELFAVYPLAFVCTALLLGLIVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPGETPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLCLRGRCSACAAPISKRYPLTELSCGLLSAFIAWQVGFGWPACLLIFLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDAMWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVILLRVREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1027185 AB4P97_RS19085 WP_150595329.1 4079730..4080602(+) (pilD) [Pseudomonas sp. A1230]
ATGCCTATCGACGAACTGTTTGCCGTTTACCCACTGGCCTTCGTCTGCACGGCGTTGCTGCTCGGTCTTATCGTCGGCAG
CTTTCTCAATGTGCTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGACGTGCTCGGTC
TGCCCGGCGAAACGCCGCTGCCGACCTACAACCTGATGCTGCCGCACTCCGAGTGCCCGCACTGCGCACATCGAATTCGT
GCGTGGGAAAACATCCCGCTGCTCAGTTATCTGTGCCTGCGCGGACGCTGCTCCGCGTGTGCAGCGCCGATCAGCAAACG
CTATCCGTTGACCGAACTGAGTTGTGGACTGCTTTCGGCGTTTATCGCCTGGCAGGTGGGTTTTGGCTGGCCGGCCTGTC
TGTTGATCTTCCTCACCTGGGGCTTGCTGGCGATGAGTCTGATCGACACCGAGCATCAATTGCTGCCCGATGTGCTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTGCCGCTGCACGATGCAATGTGGGGCGCGGT
GGCCGGTTATATGGCGCTGTGGTCGGTTTTCTGGCTGTTCAAACTGCTGACCGGCAAGGACGGCATCGGTCACGGTGATT
TCAAGCTGCTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCTTCGCTGGTGGGA
GCGATTCTCGGGGTGATTTTGCTGCGTGTGCGCGAGCAGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.965	97.241	0.534
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Neisseria gonorrhoeae MS11	48.889	93.103	0.455
pilD	Acinetobacter baumannii D1279779	48.315	92.069	0.445
pilD	Acinetobacter nosocomialis M2	48.315	92.069	0.445