Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB4P92_RS20435 Genome accession   NZ_CP162581
Coordinates   4411516..4412733 (-) Length   405 a.a.
NCBI ID   WP_395598063.1    Uniprot ID   -
Organism   Pseudomonas sp. A0308     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4406516..4417733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P92_RS20405 (AB4P92_20375) - 4407149..4408603 (-) 1455 WP_042561118.1 TrkH family potassium uptake protein -
  AB4P92_RS20410 (AB4P92_20380) - 4408849..4409538 (+) 690 WP_395598061.1 energy-coupling factor ABC transporter permease -
  AB4P92_RS20415 (AB4P92_20385) - 4409604..4409819 (+) 216 WP_042561116.1 hypothetical protein -
  AB4P92_RS20420 (AB4P92_20390) yacG 4409825..4410025 (-) 201 WP_042561115.1 DNA gyrase inhibitor YacG -
  AB4P92_RS20425 (AB4P92_20395) coaE 4410022..4410645 (-) 624 WP_150597110.1 dephospho-CoA kinase -
  AB4P92_RS20430 (AB4P92_20400) pilD 4410642..4411514 (-) 873 WP_395598062.1 prepilin peptidase Machinery gene
  AB4P92_RS20435 (AB4P92_20405) pilC 4411516..4412733 (-) 1218 WP_395598063.1 type II secretion system F family protein Machinery gene
  AB4P92_RS20440 (AB4P92_20410) pilB 4412736..4414436 (-) 1701 WP_395598064.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB4P92_RS20445 (AB4P92_20415) - 4414663..4415094 (+) 432 WP_042561110.1 pilin -
  AB4P92_RS20450 (AB4P92_20420) - 4415394..4415750 (+) 357 WP_042561109.1 BON domain-containing protein -
  AB4P92_RS20455 (AB4P92_20425) - 4416016..4416315 (-) 300 WP_395598065.1 DUF2845 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44237.01 Da        Isoelectric Point: 10.1090

>NTDB_id=1027161 AB4P92_RS20435 WP_395598063.1 4411516..4412733(-) (pilC) [Pseudomonas sp. A0308]
MAVKAAKISVYAWEGTDRKGSKLSGELSGQNPALIKAQLRKQGINPGKVRKKTASLFSFGKRIKPRDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEIAAGNSFANALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFESVFSGFGAELPAFTLLVISLSEFMQQWWWAILVALVAAFFGTR
RALKTSQAMRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVLLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRTTGVFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1027161 AB4P92_RS20435 WP_395598063.1 4411516..4412733(-) (pilC) [Pseudomonas sp. A0308]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTCTACGCCTGGGAAGGCACGGACAGGAAAGGCAGCAAACTCAGCGGTGAATT
AAGCGGGCAGAACCCGGCACTGATCAAGGCTCAACTGCGCAAGCAAGGGATCAATCCGGGCAAGGTGCGTAAAAAAACTG
CCTCGCTTTTTAGCTTCGGCAAACGCATCAAGCCCCGGGACATCGCCCTGTTCACGCGGCAGATGGCGACCATGATGAAG
GCTGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCGGTGAGGGCTTCGAAAACCCGGCCATGCGCAAACTGGTCGACGA
GGTGAAACAGGAGATCGCCGCCGGTAACAGTTTCGCCAACGCCCTGCGCAAGAAGCCGCAGTATTTCGATGAGTTGTATT
GCAACCTCGTGGATGCCGGCGAACAGTCCGGCGCCCTCGACACGTTGCTGGAACGGGTCGCGACCTACAAGGAAAAAAGC
GAAGCCCTAAAGGCCAAAATCAAGAAAGCCATGACTTACCCCACCGCCGTGGTGCTGGTTGCAGCCGTGGTGACCGGGAT
TCTGCTGGTGAAAGTGGTGCCGCAATTCGAGTCGGTTTTTTCCGGTTTTGGCGCCGAGTTGCCGGCCTTCACCCTGCTGG
TCATCAGCCTCTCGGAATTCATGCAGCAATGGTGGTGGGCGATACTCGTTGCGCTGGTGGCCGCTTTTTTCGGCACCCGC
CGTGCGCTGAAAACATCCCAGGCCATGCGCGATCGCAAAGACACCTGGCTATTGAAGCTGCCGTTGGTGGGCACGCTGAT
GTACAAATCTGCCGTTGCACGCTTCGCCCGGACCCTGTCGACCACATTTGCTGCCGGCGTGCTTTTGGTGGAAGCGCTCG
ACTCGGTGGCCGGCGCCACGGGCAACGTGGTGTTCAAGCGCGCGGTATTGCGCATCCGCCAGGATGTTTCCACGGGCATG
CAGCTGAATTTTTCCATGCGCACCACCGGGGTTTTTCCCAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCGCTGGACGAAATGCTCGACAAGGTCGCCGGGTTTTACGAGGACGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TCATGGAGCCGTTCATCATGGTCGTCCTGGGGGTGATCGTCGGCGGTCTGGTGGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.815

100

0.748
  pilC Acinetobacter baylyi ADP1

59.804

100

0.602
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

53.75

98.765

0.531
  pilG Neisseria gonorrhoeae MS11

43.424

99.506

0.432
  pilG Neisseria meningitidis 44/76-A

42.928

99.506

0.427
  pilC Vibrio cholerae strain A1552

43.434

97.778

0.425
  pilC Vibrio campbellii strain DS40M4

40.887

100

0.41
  pilC Thermus thermophilus HB27

38.903

99.012

0.385

Multiple sequence alignment