Detailed information NTG1027160

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4P92_RS20430
• Genome accession: NZ_CP162581
• Coordinates: 4410642..4411514 (-)
• Length: 290 a.a.
• NCBI ID: WP_395598062.1
• Uniprot ID: -
• Organism: Pseudomonas sp. A0308
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4405642..4416514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P92_RS20400 (AB4P92_20370)	-	4406049..4407044 (-)	996	WP_150597108.1	TRAP transporter substrate-binding protein	-
AB4P92_RS20405 (AB4P92_20375)	-	4407149..4408603 (-)	1455	WP_042561118.1	TrkH family potassium uptake protein	-
AB4P92_RS20410 (AB4P92_20380)	-	4408849..4409538 (+)	690	WP_395598061.1	energy-coupling factor ABC transporter permease	-
AB4P92_RS20415 (AB4P92_20385)	-	4409604..4409819 (+)	216	WP_042561116.1	hypothetical protein	-
AB4P92_RS20420 (AB4P92_20390)	yacG	4409825..4410025 (-)	201	WP_042561115.1	DNA gyrase inhibitor YacG	-
AB4P92_RS20425 (AB4P92_20395)	coaE	4410022..4410645 (-)	624	WP_150597110.1	dephospho-CoA kinase	-
AB4P92_RS20430 (AB4P92_20400)	pilD	4410642..4411514 (-)	873	WP_395598062.1	prepilin peptidase	Machinery gene
AB4P92_RS20435 (AB4P92_20405)	pilC	4411516..4412733 (-)	1218	WP_395598063.1	type II secretion system F family protein	Machinery gene
AB4P92_RS20440 (AB4P92_20410)	pilB	4412736..4414436 (-)	1701	WP_395598064.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB4P92_RS20445 (AB4P92_20415)	-	4414663..4415094 (+)	432	WP_042561110.1	pilin	-
AB4P92_RS20450 (AB4P92_20420)	-	4415394..4415750 (+)	357	WP_042561109.1	BON domain-containing protein	-
AB4P92_RS20455 (AB4P92_20425)	-	4416016..4416315 (-)	300	WP_395598065.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32295.66 Da
• Isoelectric Point: 7.5904

>NTDB_id=1027160 AB4P92_RS20430 WP_395598062.1 4410642..4411514(-) (pilD) [Pseudomonas sp. A0308]
MPIDELFAVYPLAFVCTALLLGLIVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPGETPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLCLRGRCSACAAPISKRYPLTELSCGLLSAFIAWQVGFGWPACLLIFLTWGLLAMSLIDTEHRLLPDVLV
LPLLWLGLIVNSFGLFVPLHDAMWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILMSSLVG
AILGVILLRVREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1027160 AB4P92_RS20430 WP_395598062.1 4410642..4411514(-) (pilD) [Pseudomonas sp. A0308]
ATGCCTATCGACGAACTCTTTGCCGTTTACCCACTGGCCTTCGTATGCACGGCGTTGCTGCTCGGTCTTATCGTCGGCAG
CTTTCTCAATGTGCTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGACGTGCTCGGTC
TGCCCGGCGAAACGCCGCTGCCGACCTACAACCTGATGCTGCCGCACTCCGAGTGTCCGCACTGCGCACATCGAATTCGT
GCGTGGGAAAACATCCCGCTGCTCAGTTATCTGTGCCTGCGCGGACGCTGCTCCGCGTGTGCAGCGCCGATCAGCAAACG
CTATCCGCTGACCGAACTGAGTTGTGGACTGCTTTCGGCGTTTATCGCCTGGCAGGTGGGTTTTGGCTGGCCGGCCTGTC
TGTTGATCTTCCTTACCTGGGGCTTGCTGGCGATGAGTCTGATCGACACCGAGCATCGATTGCTGCCCGATGTGCTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTGCCGCTGCACGATGCAATGTGGGGCGCGGT
GGCCGGTTACATGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAACTGCTGACCGGCAAGGACGGCATCGGTCACGGTGATT
TCAAGCTGCTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATCCTGATGTCTTCGCTGGTGGGA
GCGATTCTCGGGGTGATTTTGCTGCGTGTGCGCGAGCAGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.61	97.241	0.531
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452
pilD	Acinetobacter baumannii D1279779	47.566	92.069	0.438
pilD	Acinetobacter nosocomialis M2	47.566	92.069	0.438